Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LNB entry

There are 13 chains in PDB entry 6LNB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LYS 2	ASP 352
F	MET 1	LYS 350
E	LYS 2	LYS 350
D	LYS 2	HIS 349
C	LYS 2	LYS 350
B	LYS 2	HIS 349
H	LEU 4	ILE 630
A	LYS 2	LEU 198
J	MET 1	ARG 393
M	C 1	G 60
N	T 14	T 46
O	A 6	T 12
I	MET 1	TRP 394

There are107 helices in PDB entry 6LNB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	45	49	Right-handed 310
Helix 2	AA2	G	105	123	Right-handed alpha
Helix 3	AA3	G	127	137	Right-handed alpha
Helix 4	AA4	G	177	183	Right-handed alpha
Helix 5	AA5	G	186	199	Right-handed alpha
Helix 6	AA6	G	261	269	Right-handed alpha
Helix 7	AA7	G	305	313	Right-handed 310
Helix 8	AA8	G	316	321	Right-handed alpha
Helix 9	AA9	G	331	344	Right-handed alpha
Helix 10	AB1	F	45	49	Right-handed 310
Helix 11	AB2	F	105	123	Right-handed alpha
Helix 12	AB3	F	127	137	Right-handed alpha
Helix 13	AB4	F	178	183	Right-handed alpha
Helix 14	AB5	F	187	200	Right-handed alpha
Helix 15	AB6	F	264	269	Right-handed alpha
Helix 16	AB7	F	299	303	Right-handed 310
Helix 17	AB8	F	306	311	Right-handed alpha
Helix 18	AB9	F	312	318	Right-handed alpha
Helix 19	AC1	F	328	343	Right-handed alpha
Helix 20	AC2	E	63	67	Right-handed 310
Helix 21	AC3	E	105	113	Right-handed alpha
Helix 22	AC4	E	113	123	Right-handed alpha
Helix 23	AC5	E	125	135	Right-handed alpha
Helix 24	AC6	E	139	143	Right-handed 310
Helix 25	AC7	E	177	183	Right-handed alpha
Helix 26	AC8	E	187	200	Right-handed alpha
Helix 27	AC9	E	262	269	Right-handed alpha
Helix 28	AD1	E	305	311	Right-handed alpha
Helix 29	AD2	E	312	321	Right-handed alpha
Helix 30	AD3	E	329	337	Right-handed alpha
Helix 31	AD4	E	338	344	Right-handed alpha
Helix 32	AD5	D	61	66	Right-handed alpha
Helix 33	AD6	D	107	123	Right-handed alpha
Helix 34	AD7	D	125	138	Right-handed alpha
Helix 35	AD8	D	139	143	Right-handed 310
Helix 36	AD9	D	177	182	Right-handed alpha
Helix 37	AE1	D	186	191	Right-handed alpha
Helix 38	AE2	D	191	200	Right-handed alpha
Helix 39	AE3	D	260	266	Right-handed alpha
Helix 40	AE4	D	305	311	Right-handed alpha
Helix 41	AE5	D	312	320	Right-handed alpha
Helix 42	AE6	D	333	339	Right-handed alpha
Helix 43	AE7	D	339	344	Right-handed alpha
Helix 44	AE8	C	45	49	Right-handed 310
Helix 45	AE9	C	105	123	Right-handed alpha
Helix 46	AF1	C	125	137	Right-handed alpha
Helix 47	AF2	C	177	183	Right-handed alpha
Helix 48	AF3	C	190	198	Right-handed alpha
Helix 49	AF4	C	263	269	Right-handed alpha
Helix 50	AF5	C	305	311	Right-handed alpha
Helix 51	AF6	C	312	320	Right-handed alpha
Helix 52	AF7	C	329	344	Right-handed alpha
Helix 53	AF8	B	107	123	Right-handed alpha
Helix 54	AF9	B	125	138	Right-handed alpha
Helix 55	AG1	B	170	175	Right-handed alpha
Helix 56	AG2	B	177	183	Right-handed alpha
Helix 57	AG3	B	194	200	Right-handed alpha
Helix 58	AG4	B	262	269	Right-handed alpha
Helix 59	AG5	B	306	311	Right-handed alpha
Helix 60	AG6	B	314	321	Right-handed alpha
Helix 61	AG7	B	333	342	Right-handed alpha
Helix 62	AG8	H	15	18	Right-handed 310
Helix 63	AG9	H	19	24	Right-handed alpha
Helix 64	AH1	H	36	44	Right-handed alpha
Helix 65	AH2	H	70	77	Right-handed alpha
Helix 66	AH3	H	127	131	Right-handed 310
Helix 67	AH4	H	174	181	Right-handed alpha
Helix 68	AH5	H	220	227	Right-handed alpha
Helix 69	AH6	H	249	254	Right-handed alpha
Helix 70	AH7	H	411	427	Right-handed alpha
Helix 71	AH8	H	494	499	Right-handed alpha
Helix 72	AH9	H	527	531	Right-handed 310
Helix 73	AI1	H	549	561	Right-handed alpha
Helix 74	AI2	H	582	586	Right-handed 310
Helix 75	AI3	H	608	612	Right-handed 310
Helix 76	AI4	A	18	30	Right-handed alpha
Helix 77	AI5	A	64	69	Right-handed alpha
Helix 78	AI6	A	106	110	Right-handed 310
Helix 79	AI7	A	111	125	Right-handed alpha
Helix 80	AI8	J	14	21	Right-handed alpha
Helix 81	AI9	J	30	43	Right-handed alpha
Helix 82	AJ1	J	48	52	Right-handed 310
Helix 83	AJ2	J	67	77	Right-handed alpha
Helix 84	AJ3	J	196	206	Right-handed alpha
Helix 85	AJ4	J	216	231	Right-handed alpha
Helix 86	AJ5	J	237	242	Right-handed alpha
Helix 87	AJ6	J	246	255	Right-handed alpha
Helix 88	AJ7	J	298	308	Right-handed alpha
Helix 89	AJ8	J	328	333	Right-handed alpha
Helix 90	AJ9	J	338	343	Right-handed alpha
Helix 91	AK1	J	368	380	Right-handed alpha
Helix 92	AK2	I	13	24	Right-handed alpha
Helix 93	AK3	I	30	45	Right-handed alpha
Helix 94	AK4	I	46	50	Right-handed 310
Helix 95	AK5	I	67	81	Right-handed alpha
Helix 96	AK6	I	128	135	Right-handed alpha
Helix 97	AK7	I	139	144	Right-handed 310
Helix 98	AK8	I	196	202	Right-handed alpha
Helix 99	AK9	I	219	232	Right-handed alpha
Helix 100	AL1	I	237	246	Right-handed alpha
Helix 101	AL2	I	248	265	Right-handed alpha
Helix 102	AL3	I	297	302	Right-handed alpha
Helix 103	AL4	I	302	310	Right-handed alpha
Helix 104	AL5	I	325	332	Right-handed alpha
Helix 105	AL6	I	335	345	Right-handed alpha
Helix 106	AL7	I	368	374	Right-handed alpha
Helix 107	AL8	I	387	391	Right-handed 310

There are 42 sheets in PDB entry 6LNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	20	23	anti-parallel
Strand 3	G	84	93	anti-parallel
Strand 4	G	205	214	anti-parallel
Strand 5	G	151	159	anti-parallel
Strand 6	G	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	40	first strand
Strand 2	G	70	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	251	first strand
Strand 2	G	254	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	270	272	first strand
Strand 2	G	282	283	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	84	93	anti-parallel
Strand 3	F	19	23	anti-parallel
Strand 4	F	29	31	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	84	93	anti-parallel
Strand 3	F	205	214	anti-parallel
Strand 4	F	151	156	anti-parallel
Strand 5	F	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	41	first strand
Strand 2	F	69	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	249	first strand
Strand 2	F	256	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	272	first strand
Strand 2	F	282	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	19	23	anti-parallel
Strand 4	E	29	31	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	204	214	anti-parallel
Strand 4	E	151	159	anti-parallel
Strand 5	E	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	40	first strand
Strand 2	E	70	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	251	first strand
Strand 2	E	254	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	272	first strand
Strand 2	E	282	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	9	first strand
Strand 2	D	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	21	24	anti-parallel
Strand 3	D	84	94	anti-parallel
Strand 4	D	204	214	anti-parallel
Strand 5	D	151	159	anti-parallel
Strand 6	D	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	70	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	254	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	282	283	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	21	23	anti-parallel
Strand 3	C	85	94	anti-parallel
Strand 4	C	204	214	anti-parallel
Strand 5	C	151	159	anti-parallel
Strand 6	C	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	41	first strand
Strand 2	C	69	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	254	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	282	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	84	92	anti-parallel
Strand 4	B	206	214	anti-parallel
Strand 5	B	151	159	anti-parallel
Strand 6	B	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	A	143	145	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	254	257	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	282	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	98	first strand
Strand 2	H	189	190	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	201	204	first strand
Strand 2	H	210	215	anti-parallel
Strand 3	H	588	598	parallel
Strand 4	H	564	572	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	439	444	first strand
Strand 2	H	478	484	anti-parallel
Strand 3	H	387	394	anti-parallel
Strand 4	H	521	522	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	398	399	first strand
Strand 2	H	474	475	anti-parallel
Strand 3	H	447	448	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	457	458	first strand
Strand 2	H	464	465	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	614	616	first strand
Strand 2	H	625	627	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	90	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	167	169	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	162	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	108	109	first strand
Strand 2	J	114	115	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	96	first strand
Strand 2	I	107	110	anti-parallel
Strand 3	I	113	116	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	273	274	first strand
Strand 2	I	321	322	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LNB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNB