Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LNC entry

There are 11 chains in PDB entry 6LNC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	C 1	G 60
G	MET 1	LYS 350
F	LYS 2	LYS 350
E	LYS 2	HIS 349
D	MET 1	HIS 349
C	LYS 2	HIS 349
B	LYS 2	HIS 349
H	LEU 4	ARG 628
A	LYS 2	LEU 198
J	MET 1	TRP 394
I	MET 1	TRP 394

There are108 helices in PDB entry 6LNC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	106	123	Right-handed alpha
Helix 2	AA2	G	125	134	Right-handed alpha
Helix 3	AA3	G	177	183	Right-handed alpha
Helix 4	AA4	G	186	200	Right-handed alpha
Helix 5	AA5	G	262	269	Right-handed alpha
Helix 6	AA6	G	305	310	Right-handed alpha
Helix 7	AA7	G	312	320	Right-handed alpha
Helix 8	AA8	G	330	344	Right-handed alpha
Helix 9	AA9	F	105	123	Right-handed alpha
Helix 10	AB1	F	125	137	Right-handed alpha
Helix 11	AB2	F	178	183	Right-handed alpha
Helix 12	AB3	F	190	200	Right-handed alpha
Helix 13	AB4	F	261	269	Right-handed alpha
Helix 14	AB5	F	305	311	Right-handed alpha
Helix 15	AB6	F	312	320	Right-handed alpha
Helix 16	AB7	F	329	342	Right-handed alpha
Helix 17	AB8	E	45	49	Right-handed 310
Helix 18	AB9	E	61	66	Right-handed alpha
Helix 19	AC1	E	106	123	Right-handed alpha
Helix 20	AC2	E	126	134	Right-handed alpha
Helix 21	AC3	E	170	175	Right-handed alpha
Helix 22	AC4	E	177	183	Right-handed alpha
Helix 23	AC5	E	191	200	Right-handed alpha
Helix 24	AC6	E	299	303	Right-handed 310
Helix 25	AC7	E	305	311	Right-handed 310
Helix 26	AC8	E	312	320	Right-handed alpha
Helix 27	AC9	E	327	342	Right-handed alpha
Helix 28	AD1	D	45	49	Right-handed 310
Helix 29	AD2	D	106	123	Right-handed alpha
Helix 30	AD3	D	126	137	Right-handed alpha
Helix 31	AD4	D	178	183	Right-handed alpha
Helix 32	AD5	D	194	199	Right-handed alpha
Helix 33	AD6	D	299	303	Right-handed 310
Helix 34	AD7	D	305	311	Right-handed alpha
Helix 35	AD8	D	312	320	Right-handed alpha
Helix 36	AD9	D	333	344	Right-handed alpha
Helix 37	AE1	C	105	123	Right-handed alpha
Helix 38	AE2	C	125	138	Right-handed alpha
Helix 39	AE3	C	139	143	Right-handed 310
Helix 40	AE4	C	177	183	Right-handed alpha
Helix 41	AE5	C	191	196	Right-handed alpha
Helix 42	AE6	C	299	303	Right-handed 310
Helix 43	AE7	C	305	310	Right-handed alpha
Helix 44	AE8	C	312	320	Right-handed alpha
Helix 45	AE9	C	330	344	Right-handed alpha
Helix 46	AF1	B	107	123	Right-handed alpha
Helix 47	AF2	B	125	138	Right-handed alpha
Helix 48	AF3	B	170	175	Right-handed alpha
Helix 49	AF4	B	177	183	Right-handed alpha
Helix 50	AF5	B	187	200	Right-handed alpha
Helix 51	AF6	B	305	311	Right-handed alpha
Helix 52	AF7	B	312	320	Right-handed alpha
Helix 53	AF8	B	330	343	Right-handed alpha
Helix 54	AF9	H	6	10	Right-handed 310
Helix 55	AG1	H	16	24	Right-handed alpha
Helix 56	AG2	H	36	44	Right-handed alpha
Helix 57	AG3	H	45	47	Right-handed 310
Helix 58	AG4	H	62	66	Right-handed 310
Helix 59	AG5	H	76	80	Right-handed 310
Helix 60	AG6	H	129	133	Right-handed 310
Helix 61	AG7	H	148	153	Right-handed alpha
Helix 62	AG8	H	161	166	Right-handed alpha
Helix 63	AG9	H	174	182	Right-handed alpha
Helix 64	AH1	H	218	228	Right-handed alpha
Helix 65	AH2	H	229	231	Right-handed 310
Helix 66	AH3	H	232	236	Right-handed 310
Helix 67	AH4	H	248	254	Right-handed alpha
Helix 68	AH5	H	411	427	Right-handed alpha
Helix 69	AH6	H	496	500	Right-handed 310
Helix 70	AH7	H	515	519	Right-handed 310
Helix 71	AH8	H	528	532	Right-handed 310
Helix 72	AH9	H	550	555	Right-handed alpha
Helix 73	AI1	A	17	31	Right-handed alpha
Helix 74	AI2	A	65	70	Right-handed alpha
Helix 75	AI3	A	111	123	Right-handed alpha
Helix 76	AI4	J	14	26	Right-handed alpha
Helix 77	AI5	J	30	43	Right-handed alpha
Helix 78	AI6	J	67	82	Right-handed alpha
Helix 79	AI7	J	129	134	Right-handed alpha
Helix 80	AI8	J	139	144	Right-handed 310
Helix 81	AI9	J	196	204	Right-handed alpha
Helix 82	AJ1	J	216	231	Right-handed alpha
Helix 83	AJ2	J	236	243	Right-handed alpha
Helix 84	AJ3	J	249	265	Right-handed alpha
Helix 85	AJ4	J	274	280	Right-handed alpha
Helix 86	AJ5	J	297	309	Right-handed alpha
Helix 87	AJ6	J	312	317	Right-handed alpha
Helix 88	AJ7	J	327	332	Right-handed alpha
Helix 89	AJ8	J	335	344	Right-handed alpha
Helix 90	AJ9	J	369	379	Right-handed alpha
Helix 91	AK1	I	13	24	Right-handed alpha
Helix 92	AK2	I	29	44	Right-handed alpha
Helix 93	AK3	I	55	59	Right-handed 310
Helix 94	AK4	I	60	64	Right-handed 310
Helix 95	AK5	I	67	79	Right-handed alpha
Helix 96	AK6	I	128	135	Right-handed alpha
Helix 97	AK7	I	140	144	Right-handed 310
Helix 98	AK8	I	196	202	Right-handed alpha
Helix 99	AK9	I	219	232	Right-handed alpha
Helix 100	AL1	I	237	244	Right-handed alpha
Helix 101	AL2	I	251	265	Right-handed alpha
Helix 102	AL3	I	280	285	Right-handed alpha
Helix 103	AL4	I	297	310	Right-handed alpha
Helix 104	AL5	I	327	332	Right-handed alpha
Helix 105	AL6	I	335	344	Right-handed alpha
Helix 106	AL7	I	368	375	Right-handed alpha
Helix 107	AL8	I	375	380	Right-handed alpha
Helix 108	AL9	I	386	390	Right-handed 310

There are 37 sheets in PDB entry 6LNC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	8	first strand
Strand 2	G	102	103	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	19	23	anti-parallel
Strand 3	G	84	94	anti-parallel
Strand 4	G	204	214	anti-parallel
Strand 5	G	151	159	anti-parallel
Strand 6	G	166	169	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	41	first strand
Strand 2	G	69	75	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	251	first strand
Strand 2	G	254	257	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	102	103	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	19	23	anti-parallel
Strand 3	F	84	94	anti-parallel
Strand 4	F	204	213	anti-parallel
Strand 5	F	152	159	anti-parallel
Strand 6	F	166	168	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	41	first strand
Strand 2	F	69	75	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	249	first strand
Strand 2	F	256	257	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	272	first strand
Strand 2	F	282	283	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	7	9	anti-parallel
Strand 3	E	345	346	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	19	23	anti-parallel
Strand 4	E	29	31	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	204	214	anti-parallel
Strand 4	E	151	159	anti-parallel
Strand 5	E	166	168	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	42	first strand
Strand 2	E	68	75	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	295	296	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	84	94	anti-parallel
Strand 3	D	20	23	anti-parallel
Strand 4	D	29	31	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	84	94	anti-parallel
Strand 3	D	204	214	anti-parallel
Strand 4	D	151	159	anti-parallel
Strand 5	D	166	169	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	42	first strand
Strand 2	D	68	75	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	254	257	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	7	9	anti-parallel
Strand 3	C	345	346	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	19	23	anti-parallel
Strand 3	C	84	94	anti-parallel
Strand 4	C	204	214	anti-parallel
Strand 5	C	151	159	anti-parallel
Strand 6	C	166	168	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	70	75	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	7	9	anti-parallel
Strand 3	B	345	346	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	84	94	anti-parallel
Strand 4	B	204	213	anti-parallel
Strand 5	B	152	159	anti-parallel
Strand 6	B	166	168	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	A	145	146	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	254	257	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	83	first strand
Strand 2	H	122	123	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	203	204	first strand
Strand 2	H	210	211	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	438	449	first strand
Strand 2	H	473	484	anti-parallel
Strand 3	H	387	396	anti-parallel
Strand 4	H	507	511	anti-parallel
Strand 5	H	503	504	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	438	449	first strand
Strand 2	H	473	484	anti-parallel
Strand 3	H	387	396	anti-parallel
Strand 4	H	520	522	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	539	542	first strand
Strand 2	H	598	601	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	591	594	first strand
Strand 2	H	569	572	anti-parallel
Strand 3	H	622	626	anti-parallel
Strand 4	H	615	618	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	8	10	anti-parallel
Strand 3	A	84	85	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	165	167	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	107	110	first strand
Strand 2	J	113	116	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	322	323	first strand
Strand 2	J	367	368	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	100	first strand
Strand 2	I	106	110	anti-parallel
Strand 3	I	113	116	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	150	first strand
Strand 2	I	155	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LNC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNC