Analysis of interatomic Contacts of Structural Units in PDB entry:
6LND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LND entry

There is 1 chain in PDB entry 6LND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 MSE 1TRP 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6LND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
13 25Right-handed alpha
Helix 2
AA2
K
29 44Right-handed alpha
Helix 3
AA3
K
48 52Right-handed 310
Helix 4
AA4
K
55 59Right-handed 310
Helix 5
AA5
K
60 64Right-handed 310
Helix 6
AA6
K
67 82Right-handed alpha
Helix 7
AA7
K
89 93Right-handed 310
Helix 8
AA8
K
118 120Right-handed 310
Helix 9
AA9
K
128 136Right-handed alpha
Helix 10
AB1
K
139 144Right-handed 310
Helix 11
AB2
K
168 173Right-handed alpha
Helix 12
AB3
K
194 205Right-handed alpha
Helix 13
AB4
K
216 232Right-handed alpha
Helix 14
AB5
K
236 246Right-handed alpha
Helix 15
AB6
K
248 265Right-handed alpha
Helix 16
AB7
K
269 273Right-handed 310
Helix 17
AB8
K
274 285Right-handed alpha
Helix 18
AB9
K
297 311Right-handed alpha
Helix 19
AC1
K
316 321Right-handed alpha
Helix 20
AC2
K
324 333Right-handed alpha
Helix 21
AC3
K
335 345Right-handed alpha
Helix 22
AC4
K
369 380Right-handed alpha
Helix 23
AC5
K
386 394Right-handed 310
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There are 3 sheets in PDB entry 6LND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
95 101first strand
Strand 2
K
105 110anti-parallel
Strand 3
K
113 116anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
149 150first strand
Strand 2
K
155 156anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
322 323first strand
Strand 2
K
367 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il