Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LNH entry

There are 4 chains in PDB entry 6LNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 9	GLU 249
B	SER 18	GLU 249
C	GLU 10	GLU 249
D	PHE 17	GLU 249

There are 24 helices in PDB entry 6LNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	35	40	Right-handed 310
Helix 3	AA3	A	44	55	Right-handed alpha
Helix 4	AA4	A	56	59	Right-handed 310
Helix 5	AA5	A	113	118	Right-handed alpha
Helix 6	AA6	A	119	135	Right-handed alpha
Helix 7	AA7	B	19	30	Right-handed alpha
Helix 8	AA8	B	35	40	Right-handed 310
Helix 9	AA9	B	44	55	Right-handed alpha
Helix 10	AB1	B	56	59	Right-handed 310
Helix 11	AB2	B	113	118	Right-handed alpha
Helix 12	AB3	B	119	135	Right-handed alpha
Helix 13	AB4	C	18	30	Right-handed alpha
Helix 14	AB5	C	35	40	Right-handed 310
Helix 15	AB6	C	43	55	Right-handed alpha
Helix 16	AB7	C	56	59	Right-handed 310
Helix 17	AB8	C	113	118	Right-handed alpha
Helix 18	AB9	C	119	135	Right-handed alpha
Helix 19	AC1	D	20	30	Right-handed alpha
Helix 20	AC2	D	35	39	Right-handed 310
Helix 21	AC3	D	43	55	Right-handed alpha
Helix 22	AC4	D	56	58	Right-handed 310
Helix 23	AC5	D	113	119	Right-handed alpha
Helix 24	AC6	D	119	135	Right-handed alpha

There are 12 sheets in PDB entry 6LNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	214	217	anti-parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	236	247	anti-parallel
Strand 5	A	145	156	anti-parallel
Strand 6	A	68	77	anti-parallel
Strand 7	A	85	86	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	A	228	229	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	193	196	anti-parallel
Strand 3	A	222	225	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	214	217	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	236	247	anti-parallel
Strand 5	B	145	156	anti-parallel
Strand 6	B	68	77	anti-parallel
Strand 7	B	85	86	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	228	229	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	193	196	anti-parallel
Strand 3	B	222	225	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	214	218	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	236	247	anti-parallel
Strand 5	C	145	156	anti-parallel
Strand 6	C	68	77	anti-parallel
Strand 7	C	84	86	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	190	first strand
Strand 2	C	228	229	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	193	196	anti-parallel
Strand 3	C	222	225	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	214	217	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	236	247	anti-parallel
Strand 5	D	145	156	anti-parallel
Strand 6	D	68	77	anti-parallel
Strand 7	D	85	86	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	228	229	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	193	196	anti-parallel
Strand 3	D	222	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNH