Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LNI entry

There are 10 chains in PDB entry 6LNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 170GLY 229
B
 SER 170GLY 229
C
 SER 170GLY 229
D
 SER 170GLY 229
E
 SER 170GLY 229
F
 SER 170GLY 229
G
 SER 170GLY 229
H
 SER 170GLY 229
I
 SER 170GLY 229
J
 SER 170GLY 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 6LNI

There are 11 sheets in PDB entry 6LNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 178first strand
Strand 2
B
172 178parallel
Strand 3
C
172 178parallel
Strand 4
D
172 178parallel
Strand 5
E
172 178parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
B
182 185parallel
Strand 3
C
182 185parallel
Strand 4
D
182 185parallel
Strand 5
E
182 185parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
B
189 192parallel
Strand 3
C
189 192parallel
Strand 4
D
189 192parallel
Strand 5
E
189 192parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 202first strand
Strand 2
B
197 202parallel
Strand 3
C
197 202parallel
Strand 4
D
197 202parallel
Strand 5
E
197 202parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
B
206 210parallel
Strand 3
C
206 210parallel
Strand 4
D
206 210parallel
Strand 5
E
206 210parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
B
223 225parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
173 178first strand
Strand 2
G
172 178parallel
Strand 3
H
172 178parallel
Strand 4
I
172 178parallel
Strand 5
J
172 178parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
182 185first strand
Strand 2
G
182 185parallel
Strand 3
H
182 185parallel
Strand 4
I
182 185parallel
Strand 5
J
182 185parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
189 192first strand
Strand 2
G
189 192parallel
Strand 3
H
189 192parallel
Strand 4
I
189 192parallel
Strand 5
J
189 192parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
197 202first strand
Strand 2
G
197 202parallel
Strand 3
H
197 202parallel
Strand 4
I
197 202parallel
Strand 5
J
197 202parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
206 210first strand
Strand 2
G
206 210parallel
Strand 3
H
206 210parallel
Strand 4
I
206 210parallel
Strand 5
J
206 210parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il