Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LNM entry

There are 6 chains in PDB entry 6LNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6PRO 335
B
 GLY 347GLN 388
C
 VAL 6PRO 335
D
 GLY 347GLN 388
E
 VAL 6PRO 335
F
 PRO 346GLN 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 6LNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed alpha
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
55 68Right-handed alpha
Helix 4
AA4
A
98 109Right-handed alpha
Helix 5
AA5
A
114 135Right-handed alpha
Helix 6
AA6
A
143 145Right-handed 310
Helix 7
AA7
A
162 166Right-handed 310
Helix 8
AA8
A
182 186Right-handed 310
Helix 9
AA9
A
187 192Right-handed alpha
Helix 10
AB1
A
198 215Right-handed alpha
Helix 11
AB2
A
222 233Right-handed alpha
Helix 12
AB3
A
238 243Right-handed alpha
Helix 13
AB4
A
246 257Right-handed alpha
Helix 14
AB5
A
266 272Right-handed alpha
Helix 15
AB6
A
273 278Right-handed alpha
Helix 16
AB7
A
278 283Right-handed alpha
Helix 17
AB8
A
288 303Right-handed alpha
Helix 18
AB9
A
315 321Right-handed alpha
Helix 19
AC1
B
347 350Right-handed 310
Helix 20
AC2
B
351 368Right-handed alpha
Helix 21
AC3
C
7 11Right-handed alpha
Helix 22
AC4
C
45 50Right-handed alpha
Helix 23
AC5
C
55 69Right-handed alpha
Helix 24
AC6
C
98 109Right-handed alpha
Helix 25
AC7
C
114 135Right-handed alpha
Helix 26
AC8
C
143 145Right-handed 310
Helix 27
AC9
C
162 166Right-handed 310
Helix 28
AD1
C
182 186Right-handed 310
Helix 29
AD2
C
187 192Right-handed alpha
Helix 30
AD3
C
198 215Right-handed alpha
Helix 31
AD4
C
222 233Right-handed alpha
Helix 32
AD5
C
238 243Right-handed alpha
Helix 33
AD6
C
246 257Right-handed alpha
Helix 34
AD7
C
266 272Right-handed alpha
Helix 35
AD8
C
273 278Right-handed alpha
Helix 36
AD9
C
278 283Right-handed alpha
Helix 37
AE1
C
288 303Right-handed alpha
Helix 38
AE2
C
315 321Right-handed alpha
Helix 39
AE3
D
347 350Right-handed 310
Helix 40
AE4
D
351 369Right-handed alpha
Helix 41
AE5
E
7 11Right-handed alpha
Helix 42
AE6
E
45 50Right-handed alpha
Helix 43
AE7
E
55 69Right-handed alpha
Helix 44
AE8
E
98 109Right-handed alpha
Helix 45
AE9
E
114 135Right-handed alpha
Helix 46
AF1
E
143 145Right-handed 310
Helix 47
AF2
E
182 186Right-handed 310
Helix 48
AF3
E
187 192Right-handed alpha
Helix 49
AF4
E
198 215Right-handed alpha
Helix 50
AF5
E
222 233Right-handed alpha
Helix 51
AF6
E
238 243Right-handed alpha
Helix 52
AF7
E
246 257Right-handed alpha
Helix 53
AF8
E
266 272Right-handed alpha
Helix 54
AF9
E
273 278Right-handed alpha
Helix 55
AG1
E
278 283Right-handed alpha
Helix 56
AG2
E
288 303Right-handed alpha
Helix 57
AG3
E
315 321Right-handed alpha
Helix 58
AG4
F
347 350Right-handed 310
Helix 59
AG5
F
351 368Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 6LNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 20first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
37 44anti-parallel
Strand 4
A
86 92anti-parallel
Strand 5
A
77 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
B
370 371parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 20first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
37 44anti-parallel
Strand 4
C
86 92anti-parallel
Strand 5
C
77 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 138first strand
Strand 2
C
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 149first strand
Strand 2
C
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 20first strand
Strand 2
E
25 31anti-parallel
Strand 3
E
37 44anti-parallel
Strand 4
E
86 92anti-parallel
Strand 5
E
77 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
137 138first strand
Strand 2
E
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 149first strand
Strand 2
E
158 160anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il