Analysis of interatomic Contacts of Structural Units in PDB entry:
6LNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LNW entry

There are 3 chains in PDB entry 6LNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 524
B
 LYS 125TRP 253
C
 ILE 2ARG 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6LNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 44Right-handed alpha
Helix 2
AA2
A
58 66Right-handed alpha
Helix 3
AA3
A
76 81Right-handed alpha
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
194 200Right-handed 310
Helix 6
AA6
A
207 224Right-handed alpha
Helix 7
AA7
A
235 244Right-handed alpha
Helix 8
AA8
A
262 268Right-handed 310
Helix 9
AA9
A
269 275Right-handed alpha
Helix 10
AB1
A
283 294Right-handed alpha
Helix 11
AB2
A
295 298Right-handed 310
Helix 12
AB3
A
314 319Right-handed 310
Helix 13
AB4
A
335 349Right-handed alpha
Helix 14
AB5
A
362 379Right-handed alpha
Helix 15
AB6
A
416 424Right-handed alpha
Helix 16
AB7
A
438 449Right-handed alpha
Helix 17
AB8
A
472 474Right-handed 310
Helix 18
AB9
A
475 485Right-handed alpha
Helix 19
AC1
A
487 503Right-handed alpha
Helix 20
AC2
A
506 524Right-handed alpha
Helix 21
AC3
B
127 129Right-handed 310
Helix 22
AC4
B
215 219Right-handed 310
Helix 23
AC5
C
53 58Right-handed alpha
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There are 7 sheets in PDB entry 6LNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
48 52parallel
Strand 3
A
2 4parallel
Strand 4
A
229 233parallel
Strand 5
A
252 256parallel
Strand 6
A
278 281parallel
Strand 7
A
301 303parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
111 115anti-parallel
Strand 3
A
118 125anti-parallel
Strand 4
A
131 137anti-parallel
Strand 5
A
143 150anti-parallel
Strand 6
A
154 162anti-parallel
Strand 7
A
165 172anti-parallel
Strand 8
A
178 183anti-parallel
Strand 9
A
190 192anti-parallel
Strand 10
A
204 205anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 414first strand
Strand 2
A
352 359parallel
Strand 3
A
322 327parallel
Strand 4
A
427 432parallel
Strand 5
A
452 454parallel
Strand 6
A
467 469parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
148 165anti-parallel
Strand 3
B
140 144anti-parallel
Strand 4
C
23 26anti-parallel
Strand 5
C
32 35anti-parallel
Strand 6
C
133 142anti-parallel
Strand 7
C
71 80anti-parallel
Strand 8
C
109 113anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
230 252anti-parallel
Strand 3
B
177 186anti-parallel
Strand 4
B
221 223anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
189 199anti-parallel
Strand 3
B
230 252anti-parallel
Strand 4
B
148 165anti-parallel
Strand 5
B
131 133anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 49first strand
Strand 2
C
120 127anti-parallel
Strand 3
C
86 93anti-parallel
Strand 4
C
99 105anti-parallel
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