Analysis of interatomic Contacts of Structural Units in PDB entry:
6LO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LO8 entry

There are 10 chains in PDB entry 6LO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 24PHE 205
B
 ARG 36GLN 412
C
 GLN 87LEU 198
D
 VAL 62ASN 180
E
 ASP 2LEU 81
F
 SER 15PHE 98
G
 LYS 7ALA 80
H
 SER 14PHE 87
I
 ASP 2LEU 81
J
 SER 14SER 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6LO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 41Right-handed alpha
Helix 2
AA2
A
42 65Right-handed alpha
Helix 3
AA3
A
121 146Right-handed alpha
Helix 4
AA4
A
154 167Right-handed alpha
Helix 5
AA5
A
171 195Right-handed alpha
Helix 6
AA6
B
37 62Right-handed alpha
Helix 7
AA7
B
62 71Right-handed alpha
Helix 8
AA8
B
99 116Right-handed alpha
Helix 9
AA9
B
117 119Right-handed 310
Helix 10
AB1
B
130 148Right-handed alpha
Helix 11
AB2
B
244 261Right-handed alpha
Helix 12
AB3
B
386 394Right-handed alpha
Helix 13
AB4
B
395 412Right-handed alpha
Helix 14
AB5
C
88 120Right-handed alpha
Helix 15
AB6
C
125 137Right-handed alpha
Helix 16
AB7
C
138 167Right-handed alpha
Helix 17
AB8
C
174 198Right-handed alpha
Helix 18
AB9
D
77 93Right-handed alpha
Helix 19
AC1
D
93 103Right-handed alpha
Helix 20
AC2
D
110 134Right-handed alpha
Helix 21
AC3
D
140 166Right-handed alpha
Helix 22
AC4
D
170 180Right-handed alpha
Helix 23
AC5
E
8 40Right-handed alpha
Helix 24
AC6
E
49 81Right-handed alpha
Helix 25
AC7
F
16 45Right-handed alpha
Helix 26
AC8
F
56 84Right-handed alpha
Helix 27
AC9
F
87 92Right-handed alpha
Helix 28
AD1
F
93 98Right-handed 310
Helix 29
AD2
G
8 39Right-handed alpha
Helix 30
AD3
G
49 80Right-handed alpha
Helix 31
AD4
H
15 44Right-handed alpha
Helix 32
AD5
H
55 84Right-handed alpha
Helix 33
AD6
I
8 38Right-handed alpha
Helix 34
AD7
I
49 81Right-handed alpha
Helix 35
AD8
J
15 44Right-handed alpha
Helix 36
AD9
J
57 83Right-handed alpha
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There are 2 sheets in PDB entry 6LO8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
122 125parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
372 373parallel
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