Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LOD entry

There are 6 chains in PDB entry 6LOD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 9	ARG 226
B	CYS 78	GLU 1006
C	SER 9	ALA 464
D	THR 19	ASN 192
E	CYS 33	PRO 189
F	GLU 5	SER 399

There are 98 helices in PDB entry 6LOD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	25	Right-handed alpha
Helix 2	AA2	A	26	43	Right-handed alpha
Helix 3	AA3	A	62	68	Right-handed alpha
Helix 4	AA4	A	90	99	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	153	157	Right-handed 310
Helix 7	AA7	A	172	177	Right-handed alpha
Helix 8	AA8	A	178	181	Right-handed 310
Helix 9	AA9	A	184	188	Right-handed 310
Helix 10	AB1	A	202	210	Right-handed alpha
Helix 11	AB2	A	214	219	Right-handed alpha
Helix 12	AB3	B	146	151	Right-handed alpha
Helix 13	AB4	B	151	157	Right-handed alpha
Helix 14	AB5	B	174	191	Right-handed alpha
Helix 15	AB6	B	205	219	Right-handed alpha
Helix 16	AB7	B	232	244	Right-handed alpha
Helix 17	AB8	B	274	283	Right-handed alpha
Helix 18	AB9	B	304	309	Right-handed 310
Helix 19	AC1	B	320	329	Right-handed alpha
Helix 20	AC2	B	344	355	Right-handed alpha
Helix 21	AC3	B	355	360	Right-handed alpha
Helix 22	AC4	B	374	388	Right-handed alpha
Helix 23	AC5	B	408	420	Right-handed alpha
Helix 24	AC6	B	433	438	Right-handed alpha
Helix 25	AC7	B	443	448	Right-handed alpha
Helix 26	AC8	B	462	467	Right-handed alpha
Helix 27	AC9	B	506	516	Right-handed alpha
Helix 28	AD1	B	526	531	Right-handed alpha
Helix 29	AD2	B	538	550	Right-handed alpha
Helix 30	AD3	B	598	604	Right-handed alpha
Helix 31	AD4	B	620	628	Right-handed alpha
Helix 32	AD5	B	680	684	Right-handed 310
Helix 33	AD6	B	728	733	Right-handed alpha
Helix 34	AD7	B	773	783	Right-handed alpha
Helix 35	AD8	B	789	794	Right-handed alpha
Helix 36	AD9	B	861	866	Right-handed alpha
Helix 37	AE1	B	897	901	Right-handed 310
Helix 38	AE2	B	921	935	Right-handed alpha
Helix 39	AE3	B	968	973	Right-handed alpha
Helix 40	AE4	C	11	16	Right-handed alpha
Helix 41	AE5	C	24	33	Right-handed alpha
Helix 42	AE6	C	46	52	Right-handed alpha
Helix 43	AE7	C	52	71	Right-handed alpha
Helix 44	AE8	C	72	76	Right-handed 310
Helix 45	AE9	C	85	104	Right-handed alpha
Helix 46	AF1	C	106	111	Right-handed alpha
Helix 47	AF2	C	120	133	Right-handed alpha
Helix 48	AF3	C	136	141	Right-handed alpha
Helix 49	AF4	C	144	152	Right-handed 310
Helix 50	AF5	C	168	190	Right-handed alpha
Helix 51	AF6	C	193	200	Right-handed alpha
Helix 52	AF7	C	203	214	Right-handed alpha
Helix 53	AF8	C	220	238	Right-handed alpha
Helix 54	AF9	C	238	255	Right-handed alpha
Helix 55	AG1	C	265	287	Right-handed alpha
Helix 56	AG2	C	288	290	Right-handed 310
Helix 57	AG3	C	301	332	Right-handed alpha
Helix 58	AG4	C	334	345	Right-handed alpha
Helix 59	AG5	C	349	362	Right-handed alpha
Helix 60	AG6	C	363	373	Right-handed 310
Helix 61	AG7	C	375	403	Right-handed alpha
Helix 62	AG8	C	407	411	Right-handed 310
Helix 63	AG9	C	417	442	Right-handed alpha
Helix 64	AH1	C	446	462	Right-handed alpha
Helix 65	AH2	D	33	42	Right-handed alpha
Helix 66	AH3	D	59	64	Right-handed alpha
Helix 67	AH4	D	69	95	Right-handed alpha
Helix 68	AH5	D	112	117	Right-handed alpha
Helix 69	AH6	D	117	126	Right-handed alpha
Helix 70	AH7	D	131	136	Right-handed alpha
Helix 71	AH8	D	175	180	Right-handed alpha
Helix 72	AH9	E	98	112	Right-handed alpha
Helix 73	AI1	E	140	146	Right-handed alpha
Helix 74	AI2	E	147	157	Right-handed alpha
Helix 75	AI3	E	171	186	Right-handed alpha
Helix 76	AI4	F	8	36	Right-handed alpha
Helix 77	AI5	F	38	70	Right-handed alpha
Helix 78	AI6	F	78	87	Right-handed alpha
Helix 79	AI7	F	90	95	Right-handed alpha
Helix 80	AI8	F	96	105	Right-handed alpha
Helix 81	AI9	F	115	120	Right-handed alpha
Helix 82	AJ1	F	122	127	Right-handed alpha
Helix 83	AJ2	F	133	158	Right-handed alpha
Helix 84	AJ3	F	158	163	Right-handed alpha
Helix 85	AJ4	F	168	180	Right-handed alpha
Helix 86	AJ5	F	183	188	Right-handed alpha
Helix 87	AJ6	F	193	198	Right-handed alpha
Helix 88	AJ7	F	199	202	Right-handed 310
Helix 89	AJ8	F	209	236	Right-handed alpha
Helix 90	AJ9	F	244	266	Right-handed alpha
Helix 91	AK1	F	266	276	Right-handed alpha
Helix 92	AK2	F	281	288	Right-handed alpha
Helix 93	AK3	F	292	303	Right-handed alpha
Helix 94	AK4	F	306	311	Right-handed alpha
Helix 95	AK5	F	324	343	Right-handed alpha
Helix 96	AK6	F	344	347	Right-handed 310
Helix 97	AK7	F	357	378	Right-handed alpha
Helix 98	AK8	F	389	395	Right-handed alpha

There are 15 sheets in PDB entry 6LOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	B	88	89	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	120	124	anti-parallel
Strand 3	B	129	134	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	166	167	anti-parallel
Strand 3	B	470	471	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	196	200	parallel
Strand 3	B	426	429	parallel
Strand 4	B	453	456	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	395	398	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	262	first strand
Strand 2	B	365	369	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	485	first strand
Strand 2	B	491	494	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	646	650	anti-parallel
Strand 3	B	617	619	parallel
Strand 4	B	658	662	anti-parallel
Strand 5	B	580	585	parallel
Strand 6	B	692	696	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	727	first strand
Strand 2	B	996	997	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	961	first strand
Strand 2	B	760	765	anti-parallel
Strand 3	B	991	994	parallel
Strand 4	B	978	979	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	803	805	first strand
Strand 2	B	820	822	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	810	first strand
Strand 2	B	815	816	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	841	843	first strand
Strand 2	B	849	851	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	872	873	first strand
Strand 2	B	915	916	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	159	163	anti-parallel
Strand 3	D	24	27	anti-parallel
Strand 4	D	187	188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LOD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOD