Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LOE entry

There are 6 chains in PDB entry 6LOE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 9	ARG 226
B	CYS 78	GLU 1006
C	SER 9	ALA 464
D	THR 19	ASN 192
E	CYS 33	PRO 189
F	GLU 5	SER 399

There are100 helices in PDB entry 6LOE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	25	Right-handed alpha
Helix 2	AA2	A	26	43	Right-handed alpha
Helix 3	AA3	A	62	68	Right-handed alpha
Helix 4	AA4	A	90	99	Right-handed alpha
Helix 5	AA5	A	108	116	Right-handed alpha
Helix 6	AA6	A	153	157	Right-handed 310
Helix 7	AA7	A	170	176	Right-handed alpha
Helix 8	AA8	A	177	181	Right-handed 310
Helix 9	AA9	A	185	189	Right-handed 310
Helix 10	AB1	A	202	211	Right-handed alpha
Helix 11	AB2	B	150	154	Right-handed 310
Helix 12	AB3	B	173	188	Right-handed alpha
Helix 13	AB4	B	205	219	Right-handed alpha
Helix 14	AB5	B	234	244	Right-handed alpha
Helix 15	AB6	B	272	282	Right-handed alpha
Helix 16	AB7	B	320	323	Right-handed 310
Helix 17	AB8	B	324	332	Right-handed alpha
Helix 18	AB9	B	345	359	Right-handed alpha
Helix 19	AC1	B	374	386	Right-handed alpha
Helix 20	AC2	B	408	420	Right-handed alpha
Helix 21	AC3	B	421	423	Right-handed 310
Helix 22	AC4	B	433	438	Right-handed alpha
Helix 23	AC5	B	443	448	Right-handed alpha
Helix 24	AC6	B	487	489	Right-handed 310
Helix 25	AC7	B	506	516	Right-handed alpha
Helix 26	AC8	B	521	534	Right-handed alpha
Helix 27	AC9	B	539	550	Right-handed alpha
Helix 28	AD1	B	599	604	Right-handed alpha
Helix 29	AD2	B	621	626	Right-handed alpha
Helix 30	AD3	B	680	685	Right-handed 310
Helix 31	AD4	B	766	769	Right-handed 310
Helix 32	AD5	B	773	784	Right-handed alpha
Helix 33	AD6	B	789	794	Right-handed alpha
Helix 34	AD7	B	860	866	Right-handed alpha
Helix 35	AD8	B	898	902	Right-handed 310
Helix 36	AD9	B	921	935	Right-handed alpha
Helix 37	AE1	B	1001	1006	Right-handed alpha
Helix 38	AE2	C	11	16	Right-handed alpha
Helix 39	AE3	C	24	36	Right-handed alpha
Helix 40	AE4	C	47	72	Right-handed alpha
Helix 41	AE5	C	73	76	Right-handed 310
Helix 42	AE6	C	85	98	Right-handed alpha
Helix 43	AE7	C	98	106	Right-handed alpha
Helix 44	AE8	C	106	111	Right-handed alpha
Helix 45	AE9	C	120	132	Right-handed alpha
Helix 46	AF1	C	136	141	Right-handed alpha
Helix 47	AF2	C	144	152	Right-handed 310
Helix 48	AF3	C	166	183	Right-handed alpha
Helix 49	AF4	C	183	189	Right-handed alpha
Helix 50	AF5	C	190	200	Right-handed alpha
Helix 51	AF6	C	206	214	Right-handed alpha
Helix 52	AF7	C	220	255	Right-handed alpha
Helix 53	AF8	C	266	292	Right-handed alpha
Helix 54	AF9	C	300	322	Right-handed alpha
Helix 55	AG1	C	326	331	Right-handed alpha
Helix 56	AG2	C	334	345	Right-handed alpha
Helix 57	AG3	C	349	361	Right-handed alpha
Helix 58	AG4	C	362	373	Right-handed 310
Helix 59	AG5	C	375	403	Right-handed alpha
Helix 60	AG6	C	407	411	Right-handed 310
Helix 61	AG7	C	417	425	Right-handed alpha
Helix 62	AG8	C	426	442	Right-handed alpha
Helix 63	AG9	C	447	452	Right-handed alpha
Helix 64	AH1	C	454	464	Right-handed alpha
Helix 65	AH2	D	30	39	Right-handed alpha
Helix 66	AH3	D	69	83	Right-handed alpha
Helix 67	AH4	D	85	94	Right-handed alpha
Helix 68	AH5	D	100	104	Right-handed 310
Helix 69	AH6	D	112	118	Right-handed alpha
Helix 70	AH7	D	119	134	Right-handed alpha
Helix 71	AH8	D	150	154	Right-handed 310
Helix 72	AH9	D	173	182	Right-handed alpha
Helix 73	AI1	E	98	112	Right-handed alpha
Helix 74	AI2	E	113	118	Right-handed alpha
Helix 75	AI3	E	127	131	Right-handed 310
Helix 76	AI4	E	140	145	Right-handed alpha
Helix 77	AI5	E	147	158	Right-handed alpha
Helix 78	AI6	E	171	186	Right-handed alpha
Helix 79	AI7	F	9	36	Right-handed alpha
Helix 80	AI8	F	38	58	Right-handed alpha
Helix 81	AI9	F	58	70	Right-handed alpha
Helix 82	AJ1	F	72	77	Right-handed alpha
Helix 83	AJ2	F	78	86	Right-handed alpha
Helix 84	AJ3	F	88	96	Right-handed alpha
Helix 85	AJ4	F	96	105	Right-handed alpha
Helix 86	AJ5	F	111	115	Right-handed 310
Helix 87	AJ6	F	117	122	Right-handed alpha
Helix 88	AJ7	F	133	165	Right-handed alpha
Helix 89	AJ8	F	168	189	Right-handed alpha
Helix 90	AJ9	F	211	236	Right-handed alpha
Helix 91	AK1	F	244	276	Right-handed alpha
Helix 92	AK2	F	281	288	Right-handed alpha
Helix 93	AK3	F	292	303	Right-handed alpha
Helix 94	AK4	F	305	311	Right-handed alpha
Helix 95	AK5	F	312	314	Right-handed 310
Helix 96	AK6	F	320	344	Right-handed alpha
Helix 97	AK7	F	345	347	Right-handed 310
Helix 98	AK8	F	356	361	Right-handed alpha
Helix 99	AK9	F	361	379	Right-handed alpha
Helix 100	AL1	F	389	394	Right-handed alpha

There are 15 sheets in PDB entry 6LOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	B	88	89	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	129	134	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	170	171	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	395	398	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	365	366	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	429	first strand
Strand 2	B	453	456	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	485	first strand
Strand 2	B	491	494	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	662	first strand
Strand 2	B	581	585	parallel
Strand 3	B	692	693	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	617	619	first strand
Strand 2	B	646	650	parallel
Strand 3	B	634	635	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	B	638	639	anti-parallel
Strand 3	B	696	697	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	727	first strand
Strand 2	B	996	997	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	760	764	first strand
Strand 2	B	957	961	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	872	873	first strand
Strand 2	B	915	916	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	978	979	first strand
Strand 2	B	993	994	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	159	164	anti-parallel
Strand 3	D	20	27	anti-parallel
Strand 4	D	187	191	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LOE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOE