Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LOH entry

There are 3 chains in PDB entry 6LOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 435LEU 811
B
 GLY 435LEU 811
C
 GLN 434LEU 811
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 6LOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 454Right-handed alpha
Helix 2
AA2
A
470 480Right-handed alpha
Helix 3
AA3
A
485 489Right-handed 310
Helix 4
AA4
A
505 520Right-handed alpha
Helix 5
AA5
A
549 569Right-handed alpha
Helix 6
AA6
A
581 590Right-handed alpha
Helix 7
AA7
A
594 596Right-handed 310
Helix 8
AA8
A
597 602Right-handed alpha
Helix 9
AA9
A
602 615Right-handed alpha
Helix 10
AB1
A
616 621Right-handed 310
Helix 11
AB2
A
645 649Right-handed 310
Helix 12
AB3
A
655 669Right-handed alpha
Helix 13
AB4
A
672 687Right-handed alpha
Helix 14
AB5
A
688 693Right-handed alpha
Helix 15
AB6
A
696 706Right-handed alpha
Helix 16
AB7
A
711 719Right-handed alpha
Helix 17
AB8
A
725 731Right-handed alpha
Helix 18
AB9
A
731 742Right-handed alpha
Helix 19
AC1
A
744 757Right-handed alpha
Helix 20
AC2
A
764 769Right-handed 310
Helix 21
AC3
A
801 809Right-handed alpha
Helix 22
AC4
B
438 456Right-handed alpha
Helix 23
AC5
B
470 480Right-handed alpha
Helix 24
AC6
B
485 489Right-handed 310
Helix 25
AC7
B
503 520Right-handed alpha
Helix 26
AC8
B
549 569Right-handed alpha
Helix 27
AC9
B
570 573Right-handed 310
Helix 28
AD1
B
581 590Right-handed alpha
Helix 29
AD2
B
594 596Right-handed 310
Helix 30
AD3
B
597 602Right-handed alpha
Helix 31
AD4
B
602 609Right-handed alpha
Helix 32
AD5
B
609 616Right-handed alpha
Helix 33
AD6
B
617 621Right-handed 310
Helix 34
AD7
B
645 649Right-handed 310
Helix 35
AD8
B
655 669Right-handed alpha
Helix 36
AD9
B
672 687Right-handed alpha
Helix 37
AE1
B
688 693Right-handed alpha
Helix 38
AE2
B
696 706Right-handed alpha
Helix 39
AE3
B
711 719Right-handed alpha
Helix 40
AE4
B
725 731Right-handed alpha
Helix 41
AE5
B
731 742Right-handed alpha
Helix 42
AE6
B
744 757Right-handed alpha
Helix 43
AE7
B
764 769Right-handed 310
Helix 44
AE8
B
801 809Right-handed alpha
Helix 45
AE9
C
438 454Right-handed alpha
Helix 46
AF1
C
470 480Right-handed alpha
Helix 47
AF2
C
483 489Right-handed alpha
Helix 48
AF3
C
505 520Right-handed alpha
Helix 49
AF4
C
549 567Right-handed alpha
Helix 50
AF5
C
581 590Right-handed alpha
Helix 51
AF6
C
594 596Right-handed 310
Helix 52
AF7
C
597 602Right-handed alpha
Helix 53
AF8
C
602 616Right-handed alpha
Helix 54
AF9
C
645 649Right-handed 310
Helix 55
AG1
C
655 669Right-handed alpha
Helix 56
AG2
C
672 687Right-handed alpha
Helix 57
AG3
C
688 693Right-handed alpha
Helix 58
AG4
C
696 706Right-handed alpha
Helix 59
AG5
C
711 719Right-handed alpha
Helix 60
AG6
C
725 731Right-handed alpha
Helix 61
AG7
C
731 743Right-handed alpha
Helix 62
AG8
C
744 757Right-handed alpha
Helix 63
AG9
C
764 769Right-handed 310
Helix 64
AH1
C
801 809Right-handed alpha
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There are 12 sheets in PDB entry 6LOH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 466first strand
Strand 2
A
490 495parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 527first strand
Strand 2
A
538 539anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 630first strand
Strand 2
A
636 641anti-parallel
Strand 3
B
498 500anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 722first strand
Strand 2
A
774 778parallel
Strand 3
A
793 797parallel
Strand 4
A
786 788anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 466first strand
Strand 2
B
490 495parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
526 527first strand
Strand 2
B
538 539anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
626 629first strand
Strand 2
B
638 641anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
720 722first strand
Strand 2
B
774 778parallel
Strand 3
B
793 797parallel
Strand 4
B
786 788anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
461 465first strand
Strand 2
C
490 494parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
526 527first strand
Strand 2
C
538 539anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
626 629first strand
Strand 2
C
638 641anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
720 722first strand
Strand 2
C
774 778parallel
Strand 3
C
793 797parallel
Strand 4
C
786 788anti-parallel
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