Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LOI entry

There are 6 chains in PDB entry 6LOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 12ARG 246
B
 TYR 12ARG 246
C
 TYR 12ARG 246
D
 TYR 12ARG 246
E
 TYR 12ASN 245
F
 TYR 12ARG 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 6LOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 38Right-handed alpha
Helix 2
AA2
A
41 64Right-handed alpha
Helix 3
AA3
A
94 106Right-handed alpha
Helix 4
AA4
A
116 119Right-handed 310
Helix 5
AA5
A
120 134Right-handed alpha
Helix 6
AA6
A
149 167Right-handed alpha
Helix 7
AA7
A
176 183Right-handed alpha
Helix 8
AA8
A
190 194Right-handed 310
Helix 9
AA9
A
214 218Right-handed 310
Helix 10
AB1
A
227 231Right-handed 310
Helix 11
AB2
A
232 244Right-handed alpha
Helix 12
AB3
B
30 38Right-handed alpha
Helix 13
AB4
B
41 63Right-handed alpha
Helix 14
AB5
B
90 99Right-handed alpha
Helix 15
AB6
B
102 106Right-handed alpha
Helix 16
AB7
B
115 119Right-handed 310
Helix 17
AB8
B
120 135Right-handed alpha
Helix 18
AB9
B
149 167Right-handed alpha
Helix 19
AC1
B
176 183Right-handed alpha
Helix 20
AC2
B
190 194Right-handed 310
Helix 21
AC3
B
214 219Right-handed 310
Helix 22
AC4
B
227 231Right-handed 310
Helix 23
AC5
B
232 244Right-handed alpha
Helix 24
AC6
C
30 38Right-handed alpha
Helix 25
AC7
C
41 63Right-handed alpha
Helix 26
AC8
C
82 91Right-handed alpha
Helix 27
AC9
C
91 106Right-handed alpha
Helix 28
AD1
C
115 119Right-handed 310
Helix 29
AD2
C
120 133Right-handed alpha
Helix 30
AD3
C
149 167Right-handed alpha
Helix 31
AD4
C
171 175Right-handed 310
Helix 32
AD5
C
176 184Right-handed alpha
Helix 33
AD6
C
190 194Right-handed 310
Helix 34
AD7
C
227 231Right-handed 310
Helix 35
AD8
C
232 244Right-handed alpha
Helix 36
AD9
D
30 39Right-handed alpha
Helix 37
AE1
D
41 64Right-handed alpha
Helix 38
AE2
D
87 106Right-handed alpha
Helix 39
AE3
D
115 119Right-handed 310
Helix 40
AE4
D
120 135Right-handed alpha
Helix 41
AE5
D
149 167Right-handed alpha
Helix 42
AE6
D
171 175Right-handed 310
Helix 43
AE7
D
176 184Right-handed alpha
Helix 44
AE8
D
190 195Right-handed alpha
Helix 45
AE9
D
214 219Right-handed 310
Helix 46
AF1
D
227 231Right-handed 310
Helix 47
AF2
D
232 244Right-handed alpha
Helix 48
AF3
E
30 38Right-handed alpha
Helix 49
AF4
E
41 64Right-handed alpha
Helix 50
AF5
E
91 98Right-handed alpha
Helix 51
AF6
E
99 106Right-handed alpha
Helix 52
AF7
E
120 134Right-handed alpha
Helix 53
AF8
E
149 167Right-handed alpha
Helix 54
AF9
E
171 175Right-handed 310
Helix 55
AG1
E
176 184Right-handed alpha
Helix 56
AG2
E
190 194Right-handed 310
Helix 57
AG3
E
214 219Right-handed 310
Helix 58
AG4
E
227 231Right-handed 310
Helix 59
AG5
E
232 244Right-handed alpha
Helix 60
AG6
F
30 38Right-handed alpha
Helix 61
AG7
F
43 64Right-handed alpha
Helix 62
AG8
F
86 89Right-handed 310
Helix 63
AG9
F
90 99Right-handed alpha
Helix 64
AH1
F
102 106Right-handed alpha
Helix 65
AH2
F
115 119Right-handed 310
Helix 66
AH3
F
120 133Right-handed alpha
Helix 67
AH4
F
149 167Right-handed alpha
Helix 68
AH5
F
171 175Right-handed 310
Helix 69
AH6
F
176 183Right-handed alpha
Helix 70
AH7
F
214 219Right-handed 310
Helix 71
AH8
F
227 231Right-handed 310
Helix 72
AH9
F
232 244Right-handed alpha
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There are 6 sheets in PDB entry 6LOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 114first strand
Strand 2
A
141 146parallel
Strand 3
A
67 72parallel
Strand 4
A
23 28parallel
Strand 5
A
198 201parallel
Strand 6
A
220 223parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 113first strand
Strand 2
B
141 145parallel
Strand 3
B
67 72parallel
Strand 4
B
23 28parallel
Strand 5
B
198 201parallel
Strand 6
B
220 223parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 113first strand
Strand 2
C
141 145parallel
Strand 3
C
67 72parallel
Strand 4
C
23 28parallel
Strand 5
C
198 201parallel
Strand 6
C
220 223parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 113first strand
Strand 2
D
141 145parallel
Strand 3
D
67 72parallel
Strand 4
D
23 28parallel
Strand 5
D
198 201parallel
Strand 6
D
220 223parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
109 113first strand
Strand 2
E
141 145parallel
Strand 3
E
67 72parallel
Strand 4
E
23 28parallel
Strand 5
E
198 201parallel
Strand 6
E
220 223parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
109 113first strand
Strand 2
F
141 145parallel
Strand 3
F
67 72parallel
Strand 4
F
23 28parallel
Strand 5
F
198 201parallel
Strand 6
F
220 223parallel
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