Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LOJ entry

There are 2 chains in PDB entry 6LOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 19PHE 240
B
 SER 3ARG 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6LOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
42 57Right-handed alpha
Helix 3
AA3
A
197 202Right-handed alpha
Helix 4
AA4
A
217 229Right-handed alpha
Helix 5
AA5
B
24 32Right-handed alpha
Helix 6
AA6
B
51 60Right-handed alpha
Helix 7
AA7
B
108 110Right-handed 310
Helix 8
AA8
B
111 123Right-handed alpha
Helix 9
AA9
B
135 142Right-handed alpha
Helix 10
AB1
B
143 152Right-handed alpha
Helix 11
AB2
B
167 169Right-handed 310
Helix 12
AB3
B
170 175Right-handed alpha
Helix 13
AB4
B
197 206Right-handed alpha
Helix 14
AB5
B
213 229Right-handed alpha
Helix 15
AB6
B
252 257Right-handed alpha
Helix 16
AB7
B
262 277Right-handed alpha
Helix 17
AB8
B
289 306Right-handed alpha
Helix 18
AB9
B
311 343Right-handed alpha
Helix 19
AC1
B
350 372Right-handed alpha
Helix 20
AC2
B
375 377Right-handed 310
Helix 21
AC3
B
378 415Right-handed alpha
Helix 22
AC4
B
415 424Right-handed alpha
Helix 23
AC5
B
431 450Right-handed alpha
Helix 24
AC6
B
456 466Right-handed alpha
Helix 25
AC7
B
468 476Right-handed alpha
Helix 26
AC8
B
488 563Right-handed alpha
Helix 27
AC9
B
565 584Right-handed alpha
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There are 4 sheets in PDB entry 6LOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
81 83parallel
Strand 3
A
101 103parallel
Strand 4
A
121 123parallel
Strand 5
A
141 143parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
185 187parallel
Strand 3
A
208 210parallel
Strand 4
A
237 239parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
11 17anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
92 97anti-parallel
Strand 5
B
38 45parallel
Strand 6
B
125 130parallel
Strand 7
B
177 182parallel
Strand 8
B
233 237parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 282first strand
Strand 2
B
286 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il