Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LOS entry

There are 19 chains in PDB entry 6LOS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 37SER 416
F
 GLY 4PRO 5
F
 GLY 7PRO 8
F
 GLY 10PRO 11
F
 GLY 13LEU 20
F
 GLY 22PRO 23
F
 GLY 25PRO 26
F
 GLY 28PRO 29
G
 GLY 4PRO 5
G
 GLY 7PRO 8
G
 GLY 10LEU 20
G
 GLY 22PRO 23
G
 GLY 25PRO 26
G
 GLY 28PRO 29
H
 GLY 4PRO 5
H
 GLY 7PRO 8
H
 GLY 10LEU 20
H
 GLY 22PRO 23
H
 GLY 25PRO 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6LOS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
48 71Right-handed alpha
Helix 3
AA3
A
80 92Right-handed alpha
Helix 4
AA4
A
93 95Right-handed 310
Helix 5
AA5
A
96 107Right-handed alpha
Helix 6
AA6
A
116 129Right-handed alpha
Helix 7
AA7
A
130 133Right-handed 310
Helix 8
AA8
A
150 162Right-handed alpha
Helix 9
AA9
A
171 187Right-handed alpha
Helix 10
AB1
A
221 225Right-handed 310
Helix 11
AB2
A
285 290Right-handed alpha
Helix 12
AB3
A
293 304Right-handed alpha
Helix 13
AB4
A
324 330Right-handed alpha
Helix 14
AB5
A
333 338Right-handed 310
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There are 4 sheets in PDB entry 6LOS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
405 411anti-parallel
Strand 3
A
393 399anti-parallel
Strand 4
A
271 278anti-parallel
Strand 5
A
260 267anti-parallel
Strand 6
A
238 255anti-parallel
Strand 7
A
226 230anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
405 411anti-parallel
Strand 3
A
393 399anti-parallel
Strand 4
A
271 278anti-parallel
Strand 5
A
260 267anti-parallel
Strand 6
A
238 255anti-parallel
Strand 7
A
305 314anti-parallel
Strand 8
A
385 388parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
135 143parallel
Strand 3
A
204 213anti-parallel
Strand 4
A
352 363parallel
Strand 5
A
316 323anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 218first strand
Strand 2
A
367 369parallel
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