Analysis of interatomic Contacts of Structural Units in PDB entry:
6LOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LOW entry

There is 1 chain in PDB entry 6LOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24ILE 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6LOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 47Right-handed alpha
Helix 2
AA2
A
65 68Right-handed 310
Helix 3
AA3
A
108 115Right-handed alpha
Helix 4
AA4
A
133 142Right-handed alpha
Helix 5
AA5
A
144 148Right-handed 310
Helix 6
AA6
A
151 163Right-handed alpha
Helix 7
AA7
A
166 181Right-handed alpha
Helix 8
AA8
A
181 187Right-handed alpha
Helix 9
AA9
A
187 197Right-handed alpha
Helix 10
AB1
A
205 226Right-handed alpha
Helix 11
AB2
A
253 258Right-handed alpha
Helix 12
AB3
A
265 269Right-handed 310
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There are 3 sheets in PDB entry 6LOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
70 76parallel
Strand 3
A
82 88anti-parallel
Strand 4
A
94 99anti-parallel
Strand 5
A
102 105anti-parallel
Strand 6
A
124 127parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
57 60anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 239first strand
Strand 2
A
245 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il