Analysis of interatomic Contacts of Structural Units in PDB entry:
6LP1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LP1 entry

There are 4 chains in PDB entry 6LP1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 11	PRO 491
B	ILE 10	PRO 491
C	ILE 10	LEU 492
D	GLY 11	PRO 491

There are 68 helices in PDB entry 6LP1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	23	Right-handed alpha
Helix 2	AA2	A	42	53	Right-handed alpha
Helix 3	AA3	A	69	76	Right-handed 310
Helix 4	AA4	A	91	100	Right-handed alpha
Helix 5	AA5	A	109	123	Right-handed alpha
Helix 6	AA6	A	135	140	Right-handed alpha
Helix 7	AA7	A	196	201	Right-handed 310
Helix 8	AA8	A	202	209	Right-handed alpha
Helix 9	AA9	A	234	238	Right-handed 310
Helix 10	AB1	A	275	285	Right-handed alpha
Helix 11	AB2	A	286	288	Right-handed 310
Helix 12	AB3	A	299	305	Right-handed alpha
Helix 13	AB4	A	356	366	Right-handed alpha
Helix 14	AB5	A	400	407	Right-handed alpha
Helix 15	AB6	A	467	475	Right-handed alpha
Helix 16	AB7	B	17	23	Right-handed alpha
Helix 17	AB8	B	42	53	Right-handed alpha
Helix 18	AB9	B	69	75	Right-handed 310
Helix 19	AC1	B	91	100	Right-handed alpha
Helix 20	AC2	B	109	123	Right-handed alpha
Helix 21	AC3	B	135	140	Right-handed alpha
Helix 22	AC4	B	196	201	Right-handed 310
Helix 23	AC5	B	202	209	Right-handed alpha
Helix 24	AC6	B	227	231	Right-handed 310
Helix 25	AC7	B	234	238	Right-handed 310
Helix 26	AC8	B	276	286	Right-handed alpha
Helix 27	AC9	B	299	305	Right-handed alpha
Helix 28	AD1	B	306	308	Right-handed 310
Helix 29	AD2	B	330	334	Right-handed 310
Helix 30	AD3	B	356	366	Right-handed alpha
Helix 31	AD4	B	400	406	Right-handed alpha
Helix 32	AD5	B	467	475	Right-handed alpha
Helix 33	AD6	C	17	23	Right-handed alpha
Helix 34	AD7	C	42	53	Right-handed alpha
Helix 35	AD8	C	69	76	Right-handed 310
Helix 36	AD9	C	91	100	Right-handed alpha
Helix 37	AE1	C	109	122	Right-handed alpha
Helix 38	AE2	C	135	140	Right-handed alpha
Helix 39	AE3	C	196	201	Right-handed 310
Helix 40	AE4	C	202	209	Right-handed alpha
Helix 41	AE5	C	227	231	Right-handed 310
Helix 42	AE6	C	234	238	Right-handed 310
Helix 43	AE7	C	275	285	Right-handed alpha
Helix 44	AE8	C	286	288	Right-handed 310
Helix 45	AE9	C	299	305	Right-handed alpha
Helix 46	AF1	C	306	308	Right-handed 310
Helix 47	AF2	C	330	334	Right-handed 310
Helix 48	AF3	C	356	366	Right-handed alpha
Helix 49	AF4	C	400	406	Right-handed alpha
Helix 50	AF5	C	467	475	Right-handed alpha
Helix 51	AF6	D	17	23	Right-handed alpha
Helix 52	AF7	D	42	53	Right-handed alpha
Helix 53	AF8	D	69	76	Right-handed 310
Helix 54	AF9	D	91	100	Right-handed alpha
Helix 55	AG1	D	109	122	Right-handed alpha
Helix 56	AG2	D	135	140	Right-handed alpha
Helix 57	AG3	D	196	201	Right-handed 310
Helix 58	AG4	D	202	209	Right-handed alpha
Helix 59	AG5	D	227	231	Right-handed 310
Helix 60	AG6	D	234	238	Right-handed 310
Helix 61	AG7	D	274	285	Right-handed alpha
Helix 62	AG8	D	286	288	Right-handed 310
Helix 63	AG9	D	299	304	Right-handed alpha
Helix 64	AH1	D	305	308	Right-handed 310
Helix 65	AH2	D	330	334	Right-handed 310
Helix 66	AH3	D	356	366	Right-handed alpha
Helix 67	AH4	D	400	406	Right-handed alpha
Helix 68	AH5	D	467	475	Right-handed alpha

There are 26 sheets in PDB entry 6LP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	80	85	parallel
Strand 3	A	57	60	parallel
Strand 4	A	30	33	parallel
Strand 5	A	177	188	parallel
Strand 6	A	193	194	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	80	85	parallel
Strand 3	A	57	60	parallel
Strand 4	A	30	33	parallel
Strand 5	A	177	188	parallel
Strand 6	A	210	221	parallel
Strand 7	A	240	242	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	129	first strand
Strand 2	A	167	173	anti-parallel
Strand 3	A	161	164	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	152	155	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	354	first strand
Strand 2	A	322	325	anti-parallel
Strand 3	A	315	318	anti-parallel
Strand 4	A	293	296	parallel
Strand 5	A	371	374	parallel
Strand 6	A	411	414	parallel
Strand 7	A	442	444	parallel
Strand 8	A	448	453	anti-parallel
Strand 9	A	456	462	anti-parallel
Strand 10	A	485	486	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	378	380	anti-parallel
Strand 3	A	426	427	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	80	85	parallel
Strand 3	B	57	61	parallel
Strand 4	B	30	33	parallel
Strand 5	B	177	188	parallel
Strand 6	B	193	194	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	107	first strand
Strand 2	B	80	85	parallel
Strand 3	B	57	61	parallel
Strand 4	B	30	33	parallel
Strand 5	B	177	188	parallel
Strand 6	B	210	221	parallel
Strand 7	B	240	242	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	129	first strand
Strand 2	B	167	173	anti-parallel
Strand 3	B	161	164	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	146	first strand
Strand 2	B	152	155	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	354	first strand
Strand 2	B	322	325	anti-parallel
Strand 3	B	315	318	anti-parallel
Strand 4	B	293	296	parallel
Strand 5	B	371	374	parallel
Strand 6	B	410	414	parallel
Strand 7	B	442	444	parallel
Strand 8	B	448	453	anti-parallel
Strand 9	B	456	462	anti-parallel
Strand 10	B	485	486	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	378	380	anti-parallel
Strand 3	B	426	427	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	394	395	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	80	85	parallel
Strand 3	C	57	61	parallel
Strand 4	C	30	33	parallel
Strand 5	C	177	188	parallel
Strand 6	C	193	194	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	80	85	parallel
Strand 3	C	57	61	parallel
Strand 4	C	30	33	parallel
Strand 5	C	177	188	parallel
Strand 6	C	210	221	parallel
Strand 7	C	240	242	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	129	first strand
Strand 2	C	167	173	anti-parallel
Strand 3	C	161	164	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	152	155	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	354	first strand
Strand 2	C	322	325	anti-parallel
Strand 3	C	315	318	anti-parallel
Strand 4	C	293	296	parallel
Strand 5	C	371	374	parallel
Strand 6	C	411	414	parallel
Strand 7	C	442	444	parallel
Strand 8	C	448	453	anti-parallel
Strand 9	C	456	462	anti-parallel
Strand 10	C	485	486	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	378	380	anti-parallel
Strand 3	C	426	427	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	80	85	parallel
Strand 3	D	57	61	parallel
Strand 4	D	30	33	parallel
Strand 5	D	177	188	parallel
Strand 6	D	193	194	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	107	first strand
Strand 2	D	80	85	parallel
Strand 3	D	57	61	parallel
Strand 4	D	30	33	parallel
Strand 5	D	177	188	parallel
Strand 6	D	210	221	parallel
Strand 7	D	240	242	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	167	173	anti-parallel
Strand 3	D	161	164	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	146	first strand
Strand 2	D	152	155	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	354	first strand
Strand 2	D	322	325	anti-parallel
Strand 3	D	315	318	anti-parallel
Strand 4	D	293	296	parallel
Strand 5	D	371	374	parallel
Strand 6	D	410	414	parallel
Strand 7	D	440	444	parallel
Strand 8	D	448	453	anti-parallel
Strand 9	D	456	462	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	386	first strand
Strand 2	D	378	380	anti-parallel
Strand 3	D	426	427	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	390	first strand
Strand 2	D	394	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LP1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LP1