Analysis of interatomic Contacts of Structural Units in PDB entry:
6LP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LP2 entry

There are 3 chains in PDB entry 6LP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11ASP 394
C
 MET 1LEU 73
D
 ALA 2ASN 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6LP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 32Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
39 52Right-handed alpha
Helix 4
AA4
A
53 55Right-handed 310
Helix 5
AA5
A
60 72Right-handed alpha
Helix 6
AA6
A
72 78Right-handed alpha
Helix 7
AA7
A
82 96Right-handed alpha
Helix 8
AA8
A
96 106Right-handed alpha
Helix 9
AA9
A
115 124Right-handed alpha
Helix 10
AB1
A
151 155Right-handed 310
Helix 11
AB2
A
187 198Right-handed alpha
Helix 12
AB3
A
208 214Right-handed alpha
Helix 13
AB4
A
217 232Right-handed alpha
Helix 14
AB5
A
233 237Right-handed 310
Helix 15
AB6
A
272 279Right-handed alpha
Helix 16
AB7
A
280 287Right-handed alpha
Helix 17
AB8
A
289 303Right-handed alpha
Helix 18
AB9
A
305 318Right-handed alpha
Helix 19
AC1
A
322 327Right-handed alpha
Helix 20
AC2
A
328 332Right-handed 310
Helix 21
AC3
A
347 364Right-handed alpha
Helix 22
AC4
A
369 393Right-handed alpha
Helix 23
AC5
C
22 35Right-handed alpha
Helix 24
AC6
C
37 41Right-handed 310
Helix 25
AC7
C
56 60Right-handed 310
Helix 26
AC8
D
5 18Right-handed alpha
Helix 27
AC9
D
100 114Right-handed alpha
Helix 28
AD1
D
122 132Right-handed alpha
Helix 29
AD2
D
132 148Right-handed alpha
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There are 4 sheets in PDB entry 6LP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
337 345anti-parallel
Strand 3
A
132 141anti-parallel
Strand 4
A
240 250anti-parallel
Strand 5
A
262 264anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
172 175anti-parallel
Strand 3
A
164 167anti-parallel
Strand 4
A
146 149parallel
Strand 5
A
203 205anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 70parallel
Strand 4
C
42 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 27first strand
Strand 2
D
34 40anti-parallel
Strand 3
D
51 57anti-parallel
Strand 4
D
68 71anti-parallel
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