Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LPB entry

There are 6 chains in PDB entry 6LPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	HIS 1	GLY 28
R	ILE 26	ARG 416
B	GLN 1	ASN 340
A	GLN 12	LEU 384
N	GLN 1	SER 128
G	ALA 7	ARG 62

There are 30 helices in PDB entry 6LPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	2	26	Right-handed alpha
Helix 2	AA2	R	27	46	Right-handed alpha
Helix 3	AA3	R	80	85	Right-handed alpha
Helix 4	AA4	R	129	134	Right-handed alpha
Helix 5	AA5	R	147	175	Right-handed alpha
Helix 6	AA6	R	184	211	Right-handed alpha
Helix 7	AA7	R	224	257	Right-handed alpha
Helix 8	AA8	R	263	274	Right-handed alpha
Helix 9	AA9	R	276	290	Right-handed alpha
Helix 10	AB1	R	302	307	Right-handed alpha
Helix 11	AB2	R	310	337	Right-handed alpha
Helix 12	AB3	R	347	356	Right-handed alpha
Helix 13	AB4	R	358	363	Right-handed alpha
Helix 14	AB5	R	377	387	Right-handed alpha
Helix 15	AB6	R	391	400	Right-handed alpha
Helix 16	AB7	R	405	414	Right-handed alpha
Helix 17	AB8	B	2	25	Right-handed alpha
Helix 18	AB9	B	29	33	Right-handed 310
Helix 19	AC1	A	13	40	Right-handed alpha
Helix 20	AC2	A	53	57	Right-handed 310
Helix 21	AC3	A	235	239	Right-handed 310
Helix 22	AC4	A	252	254	Right-handed 310
Helix 23	AC5	A	255	268	Right-handed alpha
Helix 24	AC6	A	283	294	Right-handed alpha
Helix 25	AC7	A	297	301	Right-handed 310
Helix 26	AC8	A	321	340	Right-handed alpha
Helix 27	AC9	A	360	379	Right-handed alpha
Helix 28	AD1	N	87	91	Right-handed 310
Helix 29	AD2	G	8	21	Right-handed alpha
Helix 30	AD3	G	29	44	Right-handed alpha

There are 12 sheets in PDB entry 6LPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	57	58	first strand
Strand 2	R	63	64	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	76	first strand
Strand 2	R	113	117	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	79	83	anti-parallel
Strand 4	B	88	93	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	167	170	anti-parallel
Strand 4	B	175	178	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	244	249	parallel
Strand 5	A	277	282	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPB