Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LPC entry

There are 2 chains in PDB entry 6LPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 588
B
 MET 1LEU 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6LPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 18Right-handed alpha
Helix 2
AA2
A
19 23Right-handed 310
Helix 3
AA3
A
34 45Right-handed alpha
Helix 4
AA4
A
46 50Right-handed 310
Helix 5
AA5
A
80 91Right-handed alpha
Helix 6
AA6
A
111 120Right-handed alpha
Helix 7
AA7
A
121 125Right-handed 310
Helix 8
AA8
A
150 158Right-handed alpha
Helix 9
AA9
A
161 163Right-handed 310
Helix 10
AB1
A
164 183Right-handed alpha
Helix 11
AB2
A
195 214Right-handed alpha
Helix 12
AB3
A
223 227Right-handed 310
Helix 13
AB4
A
236 238Right-handed 310
Helix 14
AB5
A
248 257Right-handed alpha
Helix 15
AB6
A
285 292Right-handed alpha
Helix 16
AB7
A
298 311Right-handed alpha
Helix 17
AB8
A
327 359Right-handed alpha
Helix 18
AB9
A
361 374Right-handed alpha
Helix 19
AC1
A
386 396Right-handed alpha
Helix 20
AC2
A
400 416Right-handed alpha
Helix 21
AC3
A
420 429Right-handed alpha
Helix 22
AC4
A
433 438Right-handed alpha
Helix 23
AC5
A
439 447Right-handed 310
Helix 24
AC6
A
480 488Right-handed alpha
Helix 25
AC7
A
547 561Right-handed alpha
Helix 26
AC8
A
574 583Right-handed alpha
Helix 27
AC9
B
5 18Right-handed alpha
Helix 28
AD1
B
19 23Right-handed 310
Helix 29
AD2
B
34 45Right-handed alpha
Helix 30
AD3
B
46 51Right-handed alpha
Helix 31
AD4
B
152 158Right-handed alpha
Helix 32
AD5
B
161 163Right-handed 310
Helix 33
AD6
B
164 183Right-handed alpha
Helix 34
AD7
B
195 214Right-handed alpha
Helix 35
AD8
B
223 228Right-handed alpha
Helix 36
AD9
B
236 238Right-handed 310
Helix 37
AE1
B
248 257Right-handed alpha
Helix 38
AE2
B
285 292Right-handed alpha
Helix 39
AE3
B
298 311Right-handed alpha
Helix 40
AE4
B
328 359Right-handed alpha
Helix 41
AE5
B
361 374Right-handed alpha
Helix 42
AE6
B
377 381Right-handed 310
Helix 43
AE7
B
386 396Right-handed alpha
Helix 44
AE8
B
400 416Right-handed alpha
Helix 45
AE9
B
419 429Right-handed alpha
Helix 46
AF1
B
433 442Right-handed alpha
Helix 47
AF2
B
443 447Right-handed 310
Helix 48
AF3
B
480 488Right-handed alpha
Helix 49
AF4
B
547 561Right-handed alpha
Helix 50
AF5
B
574 583Right-handed alpha
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There are 12 sheets in PDB entry 6LPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
29 32parallel
Strand 3
A
73 75parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
127 130parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
567 569parallel
Strand 4
A
536 542parallel
Strand 5
A
229 234parallel
Strand 6
A
188 191parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
567 569parallel
Strand 4
A
536 542parallel
Strand 5
A
564 565parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
278 280anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
572 573parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
55 59parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
104 105parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 141first strand
Strand 2
B
144 146anti-parallel
Strand 3
B
567 569parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
229 234parallel
Strand 3
B
536 542parallel
Strand 4
B
564 565parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
277 280anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
545 546first strand
Strand 2
B
572 573parallel
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