Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LPF entry

There are 2 chains in PDB entry 6LPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	PHE 1061
B	THR 7	ARG 1062

There are 94 helices in PDB entry 6LPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	28	Right-handed alpha
Helix 2	AA2	A	33	38	Right-handed alpha
Helix 3	AA3	A	60	80	Right-handed alpha
Helix 4	AA4	A	95	111	Right-handed alpha
Helix 5	AA5	A	157	164	Right-handed alpha
Helix 6	AA6	A	167	172	Right-handed alpha
Helix 7	AA7	A	173	175	Right-handed 310
Helix 8	AA8	A	176	196	Right-handed alpha
Helix 9	AA9	A	200	204	Right-handed 310
Helix 10	AB1	A	211	228	Right-handed alpha
Helix 11	AB2	A	276	283	Right-handed 310
Helix 12	AB3	A	295	302	Right-handed 310
Helix 13	AB4	A	327	337	Right-handed alpha
Helix 14	AB5	A	354	358	Right-handed alpha
Helix 15	AB6	A	396	409	Right-handed alpha
Helix 16	AB7	A	409	416	Right-handed alpha
Helix 17	AB8	A	419	423	Right-handed 310
Helix 18	AB9	A	440	449	Right-handed alpha
Helix 19	AC1	A	456	467	Right-handed alpha
Helix 20	AC2	A	486	489	Right-handed 310
Helix 21	AC3	A	490	501	Right-handed alpha
Helix 22	AC4	A	536	550	Right-handed alpha
Helix 23	AC5	A	554	568	Right-handed alpha
Helix 24	AC6	A	600	611	Right-handed alpha
Helix 25	AC7	A	631	640	Right-handed alpha
Helix 26	AC8	A	651	666	Right-handed alpha
Helix 27	AC9	A	676	678	Right-handed 310
Helix 28	AD1	A	680	693	Right-handed alpha
Helix 29	AD2	A	696	700	Right-handed 310
Helix 30	AD3	A	718	722	Right-handed 310
Helix 31	AD4	A	726	745	Right-handed alpha
Helix 32	AD5	A	756	780	Right-handed alpha
Helix 33	AD6	A	791	814	Right-handed alpha
Helix 34	AD7	A	816	825	Right-handed alpha
Helix 35	AD8	A	825	839	Right-handed alpha
Helix 36	AD9	A	844	860	Right-handed alpha
Helix 37	AE1	A	863	874	Right-handed alpha
Helix 38	AE2	A	879	883	Right-handed 310
Helix 39	AE3	A	892	913	Right-handed alpha
Helix 40	AE4	A	945	962	Right-handed alpha
Helix 41	AE5	A	968	978	Right-handed alpha
Helix 42	AE6	A	979	984	Right-handed 310
Helix 43	AE7	A	985	1004	Right-handed alpha
Helix 44	AE8	A	1005	1009	Right-handed 310
Helix 45	AE9	A	1015	1022	Right-handed alpha
Helix 46	AF1	A	1023	1032	Right-handed alpha
Helix 47	AF2	A	1045	1052	Right-handed alpha
Helix 48	AF3	B	8	28	Right-handed alpha
Helix 49	AF4	B	33	41	Right-handed alpha
Helix 50	AF5	B	60	80	Right-handed alpha
Helix 51	AF6	B	95	112	Right-handed alpha
Helix 52	AF7	B	156	164	Right-handed alpha
Helix 53	AF8	B	167	174	Right-handed alpha
Helix 54	AF9	B	176	196	Right-handed alpha
Helix 55	AG1	B	200	204	Right-handed 310
Helix 56	AG2	B	211	228	Right-handed alpha
Helix 57	AG3	B	249	253	Right-handed 310
Helix 58	AG4	B	276	283	Right-handed 310
Helix 59	AG5	B	295	302	Right-handed 310
Helix 60	AG6	B	327	335	Right-handed alpha
Helix 61	AG7	B	355	358	Right-handed 310
Helix 62	AG8	B	396	409	Right-handed alpha
Helix 63	AG9	B	409	416	Right-handed alpha
Helix 64	AH1	B	419	423	Right-handed 310
Helix 65	AH2	B	440	450	Right-handed alpha
Helix 66	AH3	B	456	475	Right-handed alpha
Helix 67	AH4	B	486	501	Right-handed alpha
Helix 68	AH5	B	536	550	Right-handed alpha
Helix 69	AH6	B	554	568	Right-handed alpha
Helix 70	AH7	B	600	605	Right-handed alpha
Helix 71	AH8	B	606	611	Right-handed alpha
Helix 72	AH9	B	626	630	Right-handed 310
Helix 73	AI1	B	631	640	Right-handed alpha
Helix 74	AI2	B	651	666	Right-handed alpha
Helix 75	AI3	B	676	678	Right-handed 310
Helix 76	AI4	B	680	693	Right-handed alpha
Helix 77	AI5	B	696	700	Right-handed 310
Helix 78	AI6	B	726	745	Right-handed alpha
Helix 79	AI7	B	756	780	Right-handed alpha
Helix 80	AI8	B	791	814	Right-handed alpha
Helix 81	AI9	B	816	825	Right-handed alpha
Helix 82	AJ1	B	825	839	Right-handed alpha
Helix 83	AJ2	B	844	860	Right-handed alpha
Helix 84	AJ3	B	863	874	Right-handed alpha
Helix 85	AJ4	B	879	883	Right-handed 310
Helix 86	AJ5	B	892	915	Right-handed alpha
Helix 87	AJ6	B	945	962	Right-handed alpha
Helix 88	AJ7	B	968	979	Right-handed alpha
Helix 89	AJ8	B	980	986	Right-handed 310
Helix 90	AJ9	B	988	1004	Right-handed alpha
Helix 91	AK1	B	1005	1009	Right-handed 310
Helix 92	AK2	B	1015	1023	Right-handed alpha
Helix 93	AK3	B	1023	1032	Right-handed alpha
Helix 94	AK4	B	1045	1052	Right-handed alpha

There are 16 sheets in PDB entry 6LPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	45	49	parallel
Strand 3	A	670	674	parallel
Strand 4	A	703	707	parallel
Strand 5	A	551	552	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	231	241	anti-parallel
Strand 3	A	523	533	anti-parallel
Strand 4	A	570	572	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	353	first strand
Strand 2	A	312	317	anti-parallel
Strand 3	A	323	326	anti-parallel
Strand 4	A	287	293	parallel
Strand 5	A	261	271	anti-parallel
Strand 6	A	361	363	anti-parallel
Strand 7	A	372	376	anti-parallel
Strand 8	A	304	307	parallel
Strand 9	A	388	391	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	353	first strand
Strand 2	A	312	317	anti-parallel
Strand 3	A	323	326	anti-parallel
Strand 4	A	287	293	parallel
Strand 5	A	261	271	anti-parallel
Strand 6	A	504	510	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	433	first strand
Strand 2	A	476	477	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	A	590	591	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	716	first strand
Strand 2	A	710	712	anti-parallel
Strand 3	A	753	755	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1039	first strand
Strand 2	A	935	939	parallel
Strand 3	A	1058	1060	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	45	49	parallel
Strand 3	B	670	674	parallel
Strand 4	B	704	707	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	231	241	anti-parallel
Strand 3	B	523	533	anti-parallel
Strand 4	B	570	572	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	353	first strand
Strand 2	B	312	317	anti-parallel
Strand 3	B	323	326	anti-parallel
Strand 4	B	287	293	parallel
Strand 5	B	261	271	anti-parallel
Strand 6	B	361	363	anti-parallel
Strand 7	B	372	376	anti-parallel
Strand 8	B	304	307	parallel
Strand 9	B	388	391	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	353	first strand
Strand 2	B	312	317	anti-parallel
Strand 3	B	323	326	anti-parallel
Strand 4	B	287	293	parallel
Strand 5	B	261	271	anti-parallel
Strand 6	B	504	510	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	433	first strand
Strand 2	B	476	477	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	575	first strand
Strand 2	B	590	591	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	716	first strand
Strand 2	B	710	712	anti-parallel
Strand 3	B	753	755	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1035	1039	first strand
Strand 2	B	935	939	parallel
Strand 3	B	1058	1062	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPF