Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LPI entry

There are 5 chains in PDB entry 6LPI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ASP 7	PHE 95
A	LYS 11	VAL 560
F	ASN 8	GLN 96
B	SER 8	VAL 560
G	ASN 8	PHE 95

There are131 helices in PDB entry 6LPI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	20	32	Right-handed alpha
Helix 2	AA2	E	61	71	Right-handed alpha
Helix 3	AA3	E	86	92	Right-handed alpha
Helix 4	AA4	E	93	95	Right-handed 310
Helix 5	AA5	A	15	26	Right-handed alpha
Helix 6	AA6	A	36	38	Right-handed 310
Helix 7	AA7	A	39	48	Right-handed alpha
Helix 8	AA8	A	59	75	Right-handed alpha
Helix 9	AA9	A	85	102	Right-handed alpha
Helix 10	AB1	A	126	132	Right-handed alpha
Helix 11	AB2	A	133	135	Right-handed 310
Helix 12	AB3	A	143	145	Right-handed 310
Helix 13	AB4	A	146	160	Right-handed alpha
Helix 14	AB5	A	172	176	Right-handed alpha
Helix 15	AB6	A	197	211	Right-handed alpha
Helix 16	AB7	A	220	223	Right-handed 310
Helix 17	AB8	A	225	236	Right-handed alpha
Helix 18	AB9	A	244	247	Right-handed 310
Helix 19	AC1	A	266	274	Right-handed alpha
Helix 20	AC2	A	287	292	Right-handed alpha
Helix 21	AC3	A	293	297	Right-handed 310
Helix 22	AC4	A	309	313	Right-handed 310
Helix 23	AC5	A	326	335	Right-handed alpha
Helix 24	AC6	A	336	338	Right-handed 310
Helix 25	AC7	A	343	355	Right-handed alpha
Helix 26	AC8	A	369	379	Right-handed alpha
Helix 27	AC9	A	392	402	Right-handed alpha
Helix 28	AD1	A	421	433	Right-handed alpha
Helix 29	AD2	A	444	448	Right-handed alpha
Helix 30	AD3	A	449	451	Right-handed 310
Helix 31	AD4	A	452	460	Right-handed alpha
Helix 32	AD5	A	475	485	Right-handed alpha
Helix 33	AD6	A	499	507	Right-handed alpha
Helix 34	AD7	A	520	530	Right-handed alpha
Helix 35	AD8	F	20	32	Right-handed alpha
Helix 36	AD9	F	61	71	Right-handed alpha
Helix 37	AE1	F	86	93	Right-handed alpha
Helix 38	AE2	F	94	96	Right-handed 310
Helix 39	AE3	B	15	26	Right-handed alpha
Helix 40	AE4	B	36	38	Right-handed 310
Helix 41	AE5	B	39	47	Right-handed alpha
Helix 42	AE6	B	59	75	Right-handed alpha
Helix 43	AE7	B	85	102	Right-handed alpha
Helix 44	AE8	B	113	117	Right-handed 310
Helix 45	AE9	B	126	132	Right-handed alpha
Helix 46	AF1	B	133	135	Right-handed 310
Helix 47	AF2	B	143	145	Right-handed 310
Helix 48	AF3	B	146	160	Right-handed alpha
Helix 49	AF4	B	172	177	Right-handed alpha
Helix 50	AF5	B	197	210	Right-handed alpha
Helix 51	AF6	B	220	223	Right-handed 310
Helix 52	AF7	B	225	236	Right-handed alpha
Helix 53	AF8	B	266	276	Right-handed alpha
Helix 54	AF9	B	287	292	Right-handed alpha
Helix 55	AG1	B	293	297	Right-handed 310
Helix 56	AG2	B	309	313	Right-handed 310
Helix 57	AG3	B	326	335	Right-handed alpha
Helix 58	AG4	B	336	338	Right-handed 310
Helix 59	AG5	B	343	355	Right-handed alpha
Helix 60	AG6	B	369	379	Right-handed alpha
Helix 61	AG7	B	392	402	Right-handed alpha
Helix 62	AG8	B	421	433	Right-handed alpha
Helix 63	AG9	B	444	450	Right-handed alpha
Helix 64	AH1	B	452	460	Right-handed alpha
Helix 65	AH2	B	474	485	Right-handed alpha
Helix 66	AH3	B	499	507	Right-handed alpha
Helix 67	AH4	B	521	530	Right-handed alpha
Helix 68	AH5	G	20	32	Right-handed alpha
Helix 69	AH6	G	61	72	Right-handed alpha
Helix 70	AH7	G	86	93	Right-handed alpha
Helix 71	AH8	C	15	26	Right-handed alpha
Helix 72	AH9	C	36	38	Right-handed 310
Helix 73	AI1	C	39	49	Right-handed alpha
Helix 74	AI2	C	59	75	Right-handed alpha
Helix 75	AI3	C	85	102	Right-handed alpha
Helix 76	AI4	C	126	132	Right-handed alpha
Helix 77	AI5	C	133	135	Right-handed 310
Helix 78	AI6	C	143	145	Right-handed 310
Helix 79	AI7	C	146	160	Right-handed alpha
Helix 80	AI8	C	172	176	Right-handed alpha
Helix 81	AI9	C	197	210	Right-handed alpha
Helix 82	AJ1	C	220	223	Right-handed 310
Helix 83	AJ2	C	225	237	Right-handed alpha
Helix 84	AJ3	C	244	247	Right-handed 310
Helix 85	AJ4	C	266	276	Right-handed alpha
Helix 86	AJ5	C	287	292	Right-handed alpha
Helix 87	AJ6	C	293	297	Right-handed 310
Helix 88	AJ7	C	326	335	Right-handed alpha
Helix 89	AJ8	C	336	338	Right-handed 310
Helix 90	AJ9	C	343	355	Right-handed alpha
Helix 91	AK1	C	369	379	Right-handed alpha
Helix 92	AK2	C	392	402	Right-handed alpha
Helix 93	AK3	C	421	433	Right-handed alpha
Helix 94	AK4	C	444	450	Right-handed alpha
Helix 95	AK5	C	452	461	Right-handed alpha
Helix 96	AK6	C	474	485	Right-handed alpha
Helix 97	AK7	C	499	507	Right-handed alpha
Helix 98	AK8	C	521	530	Right-handed alpha
Helix 99	AK9	H	20	32	Right-handed alpha
Helix 100	AL1	H	61	70	Right-handed alpha
Helix 101	AL2	H	86	92	Right-handed alpha
Helix 102	AL3	H	93	95	Right-handed 310
Helix 103	AL4	D	15	26	Right-handed alpha
Helix 104	AL5	D	36	38	Right-handed 310
Helix 105	AL6	D	39	47	Right-handed alpha
Helix 106	AL7	D	59	75	Right-handed alpha
Helix 107	AL8	D	85	102	Right-handed alpha
Helix 108	AL9	D	126	132	Right-handed alpha
Helix 109	AM1	D	133	135	Right-handed 310
Helix 110	AM2	D	143	145	Right-handed 310
Helix 111	AM3	D	146	160	Right-handed alpha
Helix 112	AM4	D	172	176	Right-handed alpha
Helix 113	AM5	D	197	210	Right-handed alpha
Helix 114	AM6	D	220	223	Right-handed 310
Helix 115	AM7	D	225	236	Right-handed alpha
Helix 116	AM8	D	244	247	Right-handed 310
Helix 117	AM9	D	266	276	Right-handed alpha
Helix 118	AN1	D	287	292	Right-handed alpha
Helix 119	AN2	D	293	297	Right-handed 310
Helix 120	AN3	D	309	313	Right-handed 310
Helix 121	AN4	D	326	335	Right-handed alpha
Helix 122	AN5	D	336	338	Right-handed 310
Helix 123	AN6	D	343	355	Right-handed alpha
Helix 124	AN7	D	369	379	Right-handed alpha
Helix 125	AN8	D	392	402	Right-handed alpha
Helix 126	AN9	D	421	433	Right-handed alpha
Helix 127	AO1	D	444	448	Right-handed alpha
Helix 128	AO2	D	452	460	Right-handed alpha
Helix 129	AO3	D	474	485	Right-handed alpha
Helix 130	AO4	D	499	507	Right-handed alpha
Helix 131	AO5	D	520	530	Right-handed alpha

There are 18 sheets in PDB entry 6LPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	81	first strand
Strand 2	E	8	16	anti-parallel
Strand 3	E	49	57	anti-parallel
Strand 4	E	39	43	anti-parallel
Strand 5	G	38	43	anti-parallel
Strand 6	G	49	56	anti-parallel
Strand 7	G	9	16	anti-parallel
Strand 8	G	75	81	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	178	180	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	30	33	parallel
Strand 3	A	78	82	parallel
Strand 4	A	105	111	parallel
Strand 5	A	166	171	parallel
Strand 6	A	137	140	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	240	242	parallel
Strand 3	A	214	218	parallel
Strand 4	A	278	282	parallel
Strand 5	A	302	307	parallel
Strand 6	A	321	324	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	386	389	parallel
Strand 3	A	438	443	parallel
Strand 4	A	464	470	parallel
Strand 5	A	534	539	parallel
Strand 6	A	510	513	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	81	first strand
Strand 2	F	9	16	anti-parallel
Strand 3	F	49	56	anti-parallel
Strand 4	F	38	43	anti-parallel
Strand 5	H	38	43	anti-parallel
Strand 6	H	49	56	anti-parallel
Strand 7	H	9	16	anti-parallel
Strand 8	H	75	81	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	178	180	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	30	33	parallel
Strand 3	B	78	82	parallel
Strand 4	B	105	111	parallel
Strand 5	B	166	171	parallel
Strand 6	B	137	140	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	240	242	parallel
Strand 3	B	214	218	parallel
Strand 4	B	278	282	parallel
Strand 5	B	302	306	parallel
Strand 6	B	321	323	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	386	389	parallel
Strand 3	B	438	443	parallel
Strand 4	B	464	470	parallel
Strand 5	B	534	539	parallel
Strand 6	B	510	512	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	178	180	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	30	34	parallel
Strand 3	C	78	82	parallel
Strand 4	C	105	111	parallel
Strand 5	C	166	171	parallel
Strand 6	C	137	140	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	240	242	parallel
Strand 3	C	214	218	parallel
Strand 4	C	278	282	parallel
Strand 5	C	302	306	parallel
Strand 6	C	321	323	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	411	first strand
Strand 2	C	386	389	parallel
Strand 3	C	438	443	parallel
Strand 4	C	464	470	parallel
Strand 5	C	534	539	parallel
Strand 6	C	510	513	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	178	180	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	30	33	parallel
Strand 3	D	78	82	parallel
Strand 4	D	105	111	parallel
Strand 5	D	166	171	parallel
Strand 6	D	137	140	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	260	first strand
Strand 2	D	240	242	parallel
Strand 3	D	214	218	parallel
Strand 4	D	278	282	parallel
Strand 5	D	302	306	parallel
Strand 6	D	321	323	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	411	first strand
Strand 2	D	386	389	parallel
Strand 3	D	438	443	parallel
Strand 4	D	464	470	parallel
Strand 5	D	534	539	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LPI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPI