Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LPM entry

There is 1 chain in PDB entry 6LPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33GLU 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6LPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 52Right-handed alpha
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
114 120Right-handed alpha
Helix 4
AA4
A
144 169Right-handed alpha
Helix 5
AA5
A
183 187Right-handed 310
Helix 6
AA6
A
189 193Right-handed 310
Helix 7
AA7
A
200 213Right-handed alpha
Helix 8
AA8
A
218 224Right-handed alpha
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There are 3 sheets in PDB entry 6LPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
97 101anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
35 41parallel
Strand 5
A
274 279anti-parallel
Strand 6
A
256 262anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
123 128anti-parallel
Strand 3
A
131 137anti-parallel
Strand 4
A
172 177parallel
Strand 5
A
248 253anti-parallel
Strand 6
A
216 217anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
244 245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il