Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LPP entry

There are 2 chains in PDB entry 6LPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 54SER 519
B
 PRO 53SER 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6LPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 74Right-handed alpha
Helix 2
AA2
A
85 90Right-handed alpha
Helix 3
AA3
A
108 123Right-handed alpha
Helix 4
AA4
A
173 184Right-handed alpha
Helix 5
AA5
A
199 207Right-handed alpha
Helix 6
AA6
A
212 217Right-handed alpha
Helix 7
AA7
A
218 222Right-handed alpha
Helix 8
AA8
A
251 256Right-handed alpha
Helix 9
AA9
A
288 303Right-handed alpha
Helix 10
AB1
A
315 326Right-handed alpha
Helix 11
AB2
A
346 364Right-handed alpha
Helix 12
AB3
A
375 388Right-handed alpha
Helix 13
AB4
A
388 395Right-handed alpha
Helix 14
AB5
A
407 411Right-handed 310
Helix 15
AB6
A
412 423Right-handed alpha
Helix 16
AB7
A
424 426Right-handed 310
Helix 17
AB8
A
434 437Right-handed 310
Helix 18
AB9
A
450 458Right-handed alpha
Helix 19
AC1
A
459 468Right-handed alpha
Helix 20
AC2
A
485 489Right-handed 310
Helix 21
AC3
A
491 506Right-handed alpha
Helix 22
AC4
B
63 74Right-handed alpha
Helix 23
AC5
B
81 90Right-handed alpha
Helix 24
AC6
B
108 123Right-handed alpha
Helix 25
AC7
B
173 184Right-handed alpha
Helix 26
AC8
B
192 197Right-handed 310
Helix 27
AC9
B
199 207Right-handed alpha
Helix 28
AD1
B
212 217Right-handed alpha
Helix 29
AD2
B
218 222Right-handed alpha
Helix 30
AD3
B
251 256Right-handed alpha
Helix 31
AD4
B
288 304Right-handed alpha
Helix 32
AD5
B
315 326Right-handed alpha
Helix 33
AD6
B
346 364Right-handed alpha
Helix 34
AD7
B
375 388Right-handed alpha
Helix 35
AD8
B
388 397Right-handed alpha
Helix 36
AD9
B
407 411Right-handed 310
Helix 37
AE1
B
412 422Right-handed alpha
Helix 38
AE2
B
434 437Right-handed 310
Helix 39
AE3
B
450 458Right-handed alpha
Helix 40
AE4
B
459 468Right-handed alpha
Helix 41
AE5
B
485 489Right-handed 310
Helix 42
AE6
B
491 506Right-handed alpha
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There are 6 sheets in PDB entry 6LPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
103 104anti-parallel
Strand 3
A
146 149parallel
Strand 4
A
126 129parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
165 169anti-parallel
Strand 3
A
264 271anti-parallel
Strand 4
A
223 229anti-parallel
Strand 5
A
235 238anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 373first strand
Strand 2
A
278 286anti-parallel
Strand 3
A
336 344anti-parallel
Strand 4
A
307 314anti-parallel
Strand 5
A
428 433anti-parallel
Strand 6
A
439 446anti-parallel
Strand 7
A
398 405anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
103 104anti-parallel
Strand 3
B
146 149parallel
Strand 4
B
126 129parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
165 169anti-parallel
Strand 3
B
264 271anti-parallel
Strand 4
B
223 229anti-parallel
Strand 5
B
235 238anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 373first strand
Strand 2
B
278 286anti-parallel
Strand 3
B
336 344anti-parallel
Strand 4
B
307 314anti-parallel
Strand 5
B
428 433anti-parallel
Strand 6
B
439 446anti-parallel
Strand 7
B
398 405anti-parallel
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