Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LPS entry

There is 1 chain in PDB entry 6LPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10ASP 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6LPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
20 25Right-handed alpha
Helix 3
AA3
A
36 40Right-handed 310
Helix 4
AA4
A
41 52Right-handed alpha
Helix 5
AA5
A
62 67Right-handed alpha
Helix 6
AA6
A
75 88Right-handed alpha
Helix 7
AA7
A
104 109Right-handed 310
Helix 8
AA8
A
115 119Right-handed 310
Helix 9
AA9
A
121 148Right-handed alpha
Helix 10
AB1
A
170 177Right-handed alpha
Helix 11
AB2
A
178 193Right-handed alpha
Helix 12
AB3
A
207 224Right-handed alpha
Helix 13
AB4
A
243 256Right-handed alpha
Helix 14
AB5
A
281 285Right-handed 310
Helix 15
AB6
A
286 307Right-handed alpha
Helix 16
AB7
A
324 333Right-handed alpha
Helix 17
AB8
A
352 360Right-handed alpha
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There are 2 sheets in PDB entry 6LPS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
153 158parallel
Strand 3
A
91 94parallel
Strand 4
A
54 57parallel
Strand 5
A
30 35parallel
Strand 6
A
311 316parallel
Strand 7
A
260 269parallel
Strand 8
A
236 238parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
153 158parallel
Strand 3
A
198 202parallel
Strand 4
A
230 233parallel
Strand 5
A
260 269parallel
Strand 6
A
236 238parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il