Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LPV entry

There is 1 chain in PDB entry 6LPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ILE 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6LPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed 310
Helix 2
AA2
A
53 69Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
128 132Right-handed 310
Helix 6
AA6
A
159 175Right-handed alpha
Helix 7
AA7
A
186 191Right-handed 310
Helix 8
AA8
A
207 211Right-handed 310
Helix 9
AA9
A
222 228Right-handed alpha
Helix 10
AB1
A
238 252Right-handed alpha
Helix 11
AB2
A
262 280Right-handed alpha
Helix 12
AB3
A
321 327Right-handed alpha
Helix 13
AB4
A
328 342Right-handed alpha
Helix 14
AB5
A
344 358Right-handed alpha
Helix 15
AB6
A
360 365Right-handed 310
Helix 16
AB7
A
437 449Right-handed alpha
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There are 3 sheets in PDB entry 6LPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
93 100anti-parallel
Strand 3
A
135 141parallel
Strand 4
A
147 154anti-parallel
Strand 5
A
36 43anti-parallel
Strand 6
A
405 408anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
84 88anti-parallel
Strand 3
A
75 78anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 237first strand
Strand 2
A
429 436anti-parallel
Strand 3
A
416 421anti-parallel
Strand 4
A
383 387parallel
Strand 5
A
286 294parallel
Strand 6
A
312 320anti-parallel
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