Analysis of interatomic Contacts of Structural Units in PDB entry:
6LPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LPW entry

There are 2 chains in PDB entry 6LPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10GLU 451
B
 ILE 9ALA 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 6LPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed alpha
Helix 2
AA2
A
41 44Right-handed 310
Helix 3
AA3
A
64 80Right-handed alpha
Helix 4
AA4
A
81 85Right-handed 310
Helix 5
AA5
A
117 125Right-handed 310
Helix 6
AA6
A
128 133Right-handed alpha
Helix 7
AA7
A
134 136Right-handed 310
Helix 8
AA8
A
173 189Right-handed alpha
Helix 9
AA9
A
201 206Right-handed 310
Helix 10
AB1
A
241 256Right-handed alpha
Helix 11
AB2
A
264 282Right-handed alpha
Helix 12
AB3
A
323 329Right-handed alpha
Helix 13
AB4
A
330 346Right-handed alpha
Helix 14
AB5
A
347 365Right-handed alpha
Helix 15
AB6
A
382 386Right-handed 310
Helix 16
AB7
A
422 426Right-handed 310
Helix 17
AB8
A
437 449Right-handed alpha
Helix 18
AB9
B
35 40Right-handed alpha
Helix 19
AC1
B
41 44Right-handed 310
Helix 20
AC2
B
64 77Right-handed alpha
Helix 21
AC3
B
78 79Right-handed 310
Helix 22
AC4
B
80 85Right-handed 310
Helix 23
AC5
B
117 125Right-handed 310
Helix 24
AC6
B
128 133Right-handed alpha
Helix 25
AC7
B
134 136Right-handed 310
Helix 26
AC8
B
173 189Right-handed alpha
Helix 27
AC9
B
201 206Right-handed 310
Helix 28
AD1
B
241 254Right-handed alpha
Helix 29
AD2
B
264 282Right-handed alpha
Helix 30
AD3
B
323 329Right-handed alpha
Helix 31
AD4
B
330 346Right-handed alpha
Helix 32
AD5
B
347 365Right-handed alpha
Helix 33
AD6
B
408 410Right-handed 310
Helix 34
AD7
B
422 426Right-handed 310
Helix 35
AD8
B
437 449Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6LPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 21first strand
Strand 2
A
107 114anti-parallel
Strand 3
A
149 155parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
46 53anti-parallel
Strand 6
A
399 403anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
96 100anti-parallel
Strand 3
A
86 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
145 146anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 240first strand
Strand 2
A
429 436anti-parallel
Strand 3
A
412 416anti-parallel
Strand 4
A
376 380parallel
Strand 5
A
288 296parallel
Strand 6
A
314 322anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 21first strand
Strand 2
B
107 114anti-parallel
Strand 3
B
149 155parallel
Strand 4
B
161 168anti-parallel
Strand 5
B
46 53anti-parallel
Strand 6
B
399 403anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
86 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
145 146anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 240first strand
Strand 2
B
429 436anti-parallel
Strand 3
B
412 416anti-parallel
Strand 4
B
375 380parallel
Strand 5
B
288 296parallel
Strand 6
B
314 322anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il