Analysis of interatomic Contacts of Structural Units in PDB entry:
6LQA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LQA entry

There is 1 chain in PDB entry 6LQA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 119GLU 1781
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6LQA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
120 129Right-handed alpha
Helix 2
AA2
B
130 149Right-handed alpha
Helix 3
AA3
B
156 179Right-handed alpha
Helix 4
AA4
B
192 208Right-handed alpha
Helix 5
AA5
B
217 222Right-handed 310
Helix 6
AA6
B
223 228Right-handed alpha
Helix 7
AA7
B
229 232Right-handed 310
Helix 8
AA8
B
235 251Right-handed alpha
Helix 9
AA9
B
252 273Right-handed alpha
Helix 10
AB1
B
303 308Right-handed alpha
Helix 11
AB2
B
357 370Right-handed alpha
Helix 12
AB3
B
373 386Right-handed alpha
Helix 13
AB4
B
389 400Right-handed alpha
Helix 14
AB5
B
400 429Right-handed alpha
Helix 15
AB6
B
700 715Right-handed alpha
Helix 16
AB7
B
720 735Right-handed alpha
Helix 17
AB8
B
744 771Right-handed alpha
Helix 18
AB9
B
772 777Right-handed alpha
Helix 19
AC1
B
782 798Right-handed alpha
Helix 20
AC2
B
805 813Right-handed alpha
Helix 21
AC3
B
814 820Right-handed 310
Helix 22
AC4
B
824 836Right-handed alpha
Helix 23
AC5
B
841 862Right-handed alpha
Helix 24
AC6
B
864 869Right-handed alpha
Helix 25
AC7
B
883 897Right-handed alpha
Helix 26
AC8
B
899 911Right-handed alpha
Helix 27
AC9
B
911 943Right-handed alpha
Helix 28
AD1
B
1190 1204Right-handed alpha
Helix 29
AD2
B
1204 1221Right-handed alpha
Helix 30
AD3
B
1222 1225Right-handed 310
Helix 31
AD4
B
1232 1268Right-handed alpha
Helix 32
AD5
B
1271 1291Right-handed alpha
Helix 33
AD6
B
1298 1304Right-handed alpha
Helix 34
AD7
B
1305 1316Right-handed 310
Helix 35
AD8
B
1317 1330Right-handed alpha
Helix 36
AD9
B
1331 1357Right-handed alpha
Helix 37
AE1
B
1380 1387Right-handed alpha
Helix 38
AE2
B
1404 1417Right-handed alpha
Helix 39
AE3
B
1421 1430Right-handed alpha
Helix 40
AE4
B
1443 1445Right-handed 310
Helix 41
AE5
B
1446 1478Right-handed alpha
Helix 42
AE6
B
1488 1499Right-handed alpha
Helix 43
AE7
B
1517 1519Right-handed 310
Helix 44
AE8
B
1520 1526Right-handed alpha
Helix 45
AE9
B
1527 1547Right-handed alpha
Helix 46
AF1
B
1553 1582Right-handed alpha
Helix 47
AF2
B
1591 1609Right-handed alpha
Helix 48
AF3
B
1610 1615Right-handed 310
Helix 49
AF4
B
1620 1627Right-handed alpha
Helix 50
AF5
B
1628 1636Right-handed 310
Helix 51
AF6
B
1640 1652Right-handed alpha
Helix 52
AF7
B
1653 1679Right-handed alpha
Helix 53
AF8
B
1696 1709Right-handed alpha
Helix 54
AF9
B
1713 1721Right-handed alpha
Helix 55
AG1
B
1744 1781Right-handed alpha
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There are 3 sheets in PDB entry 6LQA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 282first strand
Strand 2
B
339 342anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
300 302anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1361 1364first strand
Strand 2
B
1394 1397anti-parallel
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