Analysis of interatomic Contacts of Structural Units in PDB entry:
6LQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LQD entry

There are 4 chains in PDB entry 6LQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LEU 297
B
 SER 10GLN 254
C
 GLY 1GLN 242
D
 SER 12LYS 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6LQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 85Right-handed alpha
Helix 2
AA2
A
116 124Right-handed alpha
Helix 3
AA3
A
169 173Right-handed 310
Helix 4
AA4
A
215 219Right-handed 310
Helix 5
AA5
B
35 37Right-handed 310
Helix 6
AA6
B
83 87Right-handed 310
Helix 7
AA7
B
89 97Right-handed alpha
Helix 8
AA8
B
147 152Right-handed alpha
Helix 9
AA9
B
174 178Right-handed 310
Helix 10
AB1
C
43 48Right-handed alpha
Helix 11
AB2
C
64 68Right-handed 310
Helix 12
AB3
C
94 99Right-handed 310
Helix 13
AB4
C
100 105Right-handed alpha
Helix 14
AB5
C
145 150Right-handed alpha
Helix 15
AB6
C
184 190Right-handed 310
Helix 16
AB7
D
35 39Right-handed 310
Helix 17
AB8
D
49 53Right-handed 310
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There are 11 sheets in PDB entry 6LQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
D
47 48anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 94first strand
Strand 2
A
248 253anti-parallel
Strand 3
A
128 140anti-parallel
Strand 4
A
201 202anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
128 140anti-parallel
Strand 3
A
255 261anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
179 182anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
190 195parallel
Strand 3
B
101 111anti-parallel
Strand 4
B
233 246anti-parallel
Strand 5
B
64 70anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
212 223anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
180 182anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
212 220anti-parallel
Strand 3
C
70 73anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
212 220anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
164 169anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 86first strand
Strand 2
C
193 203anti-parallel
Strand 3
C
128 136anti-parallel
Strand 4
C
153 158anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
108 111anti-parallel
Strand 3
C
226 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il