Analysis of interatomic Contacts of Structural Units in PDB entry:
6LQJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LQJ entry

There are 18 chains in PDB entry 6LQJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 47	TRP 252
B	GLY 47	TRP 252
C	GLY 47	TRP 252
D	GLY 47	TRP 252
E	GLY 47	TRP 252
F	GLY 47	TRP 252
G	GLY 47	TRP 252
H	GLY 47	TRP 252
I	GLY 47	TRP 252
a	GLY 20	ASP 59
b	GLY 20	ASP 59
c	GLY 20	ASP 59
d	GLY 20	ASP 59
e	GLY 20	ASP 59
f	GLY 20	ASP 59
g	GLY 20	ASP 59
h	GLY 20	ASP 59
i	GLY 20	ASP 59

There are 45 helices in PDB entry 6LQJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	90	Right-handed alpha
Helix 2	AA2	A	100	115	Right-handed alpha
Helix 3	AA3	A	226	249	Right-handed alpha
Helix 4	AA4	B	81	90	Right-handed alpha
Helix 5	AA5	B	100	115	Right-handed alpha
Helix 6	AA6	B	226	249	Right-handed alpha
Helix 7	AA7	C	81	90	Right-handed alpha
Helix 8	AA8	C	100	115	Right-handed alpha
Helix 9	AA9	C	226	249	Right-handed alpha
Helix 10	AB1	D	81	90	Right-handed alpha
Helix 11	AB2	D	100	115	Right-handed alpha
Helix 12	AB3	D	226	249	Right-handed alpha
Helix 13	AB4	E	81	90	Right-handed alpha
Helix 14	AB5	E	100	115	Right-handed alpha
Helix 15	AB6	E	226	249	Right-handed alpha
Helix 16	AB7	F	81	90	Right-handed alpha
Helix 17	AB8	F	100	115	Right-handed alpha
Helix 18	AB9	F	226	249	Right-handed alpha
Helix 19	AC1	G	81	90	Right-handed alpha
Helix 20	AC2	G	100	115	Right-handed alpha
Helix 21	AC3	G	226	249	Right-handed alpha
Helix 22	AC4	H	81	90	Right-handed alpha
Helix 23	AC5	H	100	115	Right-handed alpha
Helix 24	AC6	H	226	249	Right-handed alpha
Helix 25	AC7	I	81	90	Right-handed alpha
Helix 26	AC8	I	100	115	Right-handed alpha
Helix 27	AC9	I	226	249	Right-handed alpha
Helix 28	AD1	a	34	36	Right-handed 310
Helix 29	AD2	a	37	47	Right-handed alpha
Helix 30	AD3	b	34	36	Right-handed 310
Helix 31	AD4	b	37	47	Right-handed alpha
Helix 32	AD5	c	34	36	Right-handed 310
Helix 33	AD6	c	37	47	Right-handed alpha
Helix 34	AD7	d	34	36	Right-handed 310
Helix 35	AD8	d	37	47	Right-handed alpha
Helix 36	AD9	e	34	36	Right-handed 310
Helix 37	AE1	e	37	47	Right-handed alpha
Helix 38	AE2	f	34	36	Right-handed 310
Helix 39	AE3	f	37	47	Right-handed alpha
Helix 40	AE4	g	34	36	Right-handed 310
Helix 41	AE5	g	37	47	Right-handed alpha
Helix 42	AE6	h	34	36	Right-handed 310
Helix 43	AE7	h	37	47	Right-handed alpha
Helix 44	AE8	i	34	36	Right-handed 310
Helix 45	AE9	i	37	47	Right-handed alpha

There are 18 sheets in PDB entry 6LQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	93	96	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	136	157	parallel
Strand 3	A	162	180	anti-parallel
Strand 4	A	186	210	anti-parallel
Strand 5	A	213	224	anti-parallel
Strand 6	I	136	157	anti-parallel
Strand 7	I	56	57	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	57	first strand
Strand 2	I	136	157	parallel
Strand 3	I	162	180	anti-parallel
Strand 4	I	186	210	anti-parallel
Strand 5	I	213	224	anti-parallel
Strand 6	G	136	157	anti-parallel
Strand 7	G	56	57	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	57	first strand
Strand 2	G	136	157	parallel
Strand 3	G	162	180	anti-parallel
Strand 4	G	186	210	anti-parallel
Strand 5	G	213	224	anti-parallel
Strand 6	C	136	157	anti-parallel
Strand 7	C	56	57	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	136	157	parallel
Strand 3	C	162	180	anti-parallel
Strand 4	C	186	210	anti-parallel
Strand 5	C	213	224	anti-parallel
Strand 6	D	136	157	anti-parallel
Strand 7	D	56	57	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	136	157	parallel
Strand 3	D	162	180	anti-parallel
Strand 4	D	186	210	anti-parallel
Strand 5	D	213	224	anti-parallel
Strand 6	F	136	157	anti-parallel
Strand 7	F	56	57	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	57	first strand
Strand 2	F	136	157	parallel
Strand 3	F	162	180	anti-parallel
Strand 4	F	186	210	anti-parallel
Strand 5	F	213	224	anti-parallel
Strand 6	H	136	157	anti-parallel
Strand 7	H	56	57	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	57	first strand
Strand 2	H	136	157	first strand
Strand 3	H	162	180	anti-parallel
Strand 4	H	186	210	anti-parallel
Strand 5	H	213	224	anti-parallel
Strand 6	E	136	157	anti-parallel
Strand 7	E	56	57	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	136	157	parallel
Strand 3	E	162	180	anti-parallel
Strand 4	E	186	210	anti-parallel
Strand 5	E	213	224	anti-parallel
Strand 6	B	136	157	anti-parallel
Strand 7	B	56	57	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	136	157	parallel
Strand 3	B	162	180	anti-parallel
Strand 4	B	186	210	anti-parallel
Strand 5	B	213	224	anti-parallel
Strand 6	A	136	157	anti-parallel
Strand 7	A	56	57	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	93	96	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	93	96	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	93	96	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	93	96	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	93	96	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	52	first strand
Strand 2	G	93	96	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	52	first strand
Strand 2	H	93	96	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	52	first strand
Strand 2	I	93	96	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LQJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LQJ