Analysis of interatomic Contacts of Structural Units in PDB entry:
6LQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LQK entry

There are 2 chains in PDB entry 6LQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 13THR 202
B
 SER 14GLY 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6LQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 62Right-handed 310
Helix 2
AA2
A
71 79Right-handed alpha
Helix 3
AA3
B
59 62Right-handed 310
Helix 4
AA4
B
71 76Right-handed alpha
Helix 5
AA5
B
138 140Right-handed 310
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There are 4 sheets in PDB entry 6LQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
31 36anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
64 70anti-parallel
Strand 5
A
102 107anti-parallel
Strand 6
A
142 147anti-parallel
Strand 7
A
163 168anti-parallel
Strand 8
A
195 199anti-parallel
Strand 9
A
21 28anti-parallel
Strand 10
A
31 36anti-parallel
Strand 11
A
46 49anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
31 36anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
64 70anti-parallel
Strand 5
A
102 107anti-parallel
Strand 6
A
112 121anti-parallel
Strand 7
A
124 133anti-parallel
Strand 8
A
184 189anti-parallel
Strand 9
A
174 179anti-parallel
Strand 10
A
163 168anti-parallel
Strand 11
A
195 199anti-parallel
Strand 12
A
21 28anti-parallel
Strand 13
A
31 36anti-parallel
Strand 14
A
46 49anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
31 36anti-parallel
Strand 3
B
21 28anti-parallel
Strand 4
B
195 198anti-parallel
Strand 5
B
163 168anti-parallel
Strand 6
B
142 147anti-parallel
Strand 7
B
102 107anti-parallel
Strand 8
B
64 70anti-parallel
Strand 9
B
21 28anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
183 189anti-parallel
Strand 4
B
174 180anti-parallel
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