Analysis of interatomic Contacts of Structural Units in PDB entry:
6LQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LQL entry

There is 1 chain in PDB entry 6LQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ALA 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6LQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
69 78Right-handed alpha
Helix 3
AA3
A
113 132Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
141 146Right-handed alpha
Helix 6
AA6
A
149 158Right-handed alpha
Helix 7
AA7
A
160 175Right-handed alpha
Helix 8
AA8
A
183 194Right-handed alpha
Helix 9
AA9
A
196 202Right-handed alpha
Helix 10
AB1
A
217 228Right-handed alpha
Helix 11
AB2
A
266 272Right-handed alpha
Helix 12
AB3
A
280 290Right-handed alpha
Helix 13
AB4
A
305 310Right-handed 310
Helix 14
AB5
A
345 354Right-handed alpha
Helix 15
AB6
A
355 372Right-handed alpha
Helix 16
AB7
A
373 377Right-handed 310
Helix 17
AB8
A
387 389Right-handed 310
Helix 18
AB9
A
403 409Right-handed alpha
Helix 19
AC1
A
410 413Right-handed 310
Helix 20
AC2
A
423 427Right-handed 310
Helix 21
AC3
A
433 453Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6LQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
32 35parallel
Strand 3
A
9 12parallel
Strand 4
A
260 263parallel
Strand 5
A
419 421parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
210 212anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
312 319parallel
Strand 4
A
324 328anti-parallel
Strand 5
A
337 344anti-parallel
Strand 6
A
295 302anti-parallel
Strand 7
A
380 385anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 258first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
274 276parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il