Analysis of interatomic Contacts of Structural Units in PDB entry:
6LQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LQW entry

There are 2 chains in PDB entry 6LQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASN 595
B
 SER 1ASN 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6LQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 83Right-handed alpha
Helix 2
AA2
A
98 112Right-handed alpha
Helix 3
AA3
A
127 133Right-handed alpha
Helix 4
AA4
A
150 155Right-handed alpha
Helix 5
AA5
A
189 194Right-handed alpha
Helix 6
AA6
A
196 203Right-handed alpha
Helix 7
AA7
A
235 240Right-handed alpha
Helix 8
AA8
A
259 284Right-handed alpha
Helix 9
AA9
A
288 311Right-handed alpha
Helix 10
AB1
A
312 318Right-handed alpha
Helix 11
AB2
A
320 325Right-handed alpha
Helix 12
AB3
A
342 347Right-handed alpha
Helix 13
AB4
A
348 353Right-handed 310
Helix 14
AB5
A
377 380Right-handed 310
Helix 15
AB6
A
383 388Right-handed alpha
Helix 16
AB7
A
392 402Right-handed alpha
Helix 17
AB8
A
414 419Right-handed alpha
Helix 18
AB9
A
432 444Right-handed alpha
Helix 19
AC1
A
448 456Right-handed alpha
Helix 20
AC2
A
463 472Right-handed alpha
Helix 21
AC3
A
473 485Right-handed alpha
Helix 22
AC4
A
486 490Right-handed 310
Helix 23
AC5
A
491 498Right-handed alpha
Helix 24
AC6
A
508 525Right-handed alpha
Helix 25
AC7
A
537 545Right-handed alpha
Helix 26
AC8
A
548 557Right-handed alpha
Helix 27
AC9
A
587 591Right-handed 310
Helix 28
AD1
B
74 83Right-handed alpha
Helix 29
AD2
B
98 112Right-handed alpha
Helix 30
AD3
B
125 133Right-handed alpha
Helix 31
AD4
B
149 155Right-handed alpha
Helix 32
AD5
B
189 194Right-handed alpha
Helix 33
AD6
B
196 203Right-handed alpha
Helix 34
AD7
B
235 240Right-handed alpha
Helix 35
AD8
B
259 284Right-handed alpha
Helix 36
AD9
B
288 312Right-handed alpha
Helix 37
AE1
B
312 318Right-handed alpha
Helix 38
AE2
B
320 325Right-handed alpha
Helix 39
AE3
B
340 347Right-handed alpha
Helix 40
AE4
B
348 354Right-handed 310
Helix 41
AE5
B
377 380Right-handed 310
Helix 42
AE6
B
383 388Right-handed alpha
Helix 43
AE7
B
392 402Right-handed alpha
Helix 44
AE8
B
414 419Right-handed alpha
Helix 45
AE9
B
432 444Right-handed alpha
Helix 46
AF1
B
448 456Right-handed alpha
Helix 47
AF2
B
463 472Right-handed alpha
Helix 48
AF3
B
473 485Right-handed alpha
Helix 49
AF4
B
486 490Right-handed 310
Helix 50
AF5
B
491 499Right-handed alpha
Helix 51
AF6
B
508 525Right-handed alpha
Helix 52
AF7
B
537 545Right-handed alpha
Helix 53
AF8
B
548 555Right-handed alpha
Helix 54
AF9
B
587 591Right-handed 310
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There are 13 sheets in PDB entry 6LQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
403 405anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
373 375anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
429 431anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 562first strand
Strand 2
A
577 578anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
403 405anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
157 158anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
212 213anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
374 375anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 422first strand
Strand 2
B
429 431anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
561 562first strand
Strand 2
B
577 578anti-parallel
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