Analysis of interatomic Contacts of Structural Units in PDB entry:
6LR0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LR0 entry

There is 1 chain in PDB entry 6LR0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
U
 ARG 44THR 1315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6LR0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
U
46 50Right-handed 310
Helix 2
AA2
U
79 84Right-handed alpha
Helix 3
AA3
U
88 100Right-handed alpha
Helix 4
AA4
U
147 155Right-handed alpha
Helix 5
AA5
U
173 183Right-handed alpha
Helix 6
AA6
U
187 192Right-handed 310
Helix 7
AA7
U
230 238Right-handed alpha
Helix 8
AA8
U
240 245Right-handed alpha
Helix 9
AA9
U
248 257Right-handed alpha
Helix 10
AB1
U
258 263Right-handed alpha
Helix 11
AB2
U
266 275Right-handed alpha
Helix 12
AB3
U
277 282Right-handed alpha
Helix 13
AB4
U
287 294Right-handed alpha
Helix 14
AB5
U
308 312Right-handed 310
Helix 15
AB6
U
320 325Right-handed alpha
Helix 16
AB7
U
329 334Right-handed alpha
Helix 17
AB8
U
335 344Right-handed alpha
Helix 18
AB9
U
363 376Right-handed alpha
Helix 19
AC1
U
377 386Right-handed alpha
Helix 20
AC2
U
392 397Right-handed alpha
Helix 21
AC3
U
462 467Right-handed alpha
Helix 22
AC4
U
490 495Right-handed alpha
Helix 23
AC5
U
525 535Right-handed alpha
Helix 24
AC6
U
540 544Right-handed 310
Helix 25
AC7
U
563 575Right-handed alpha
Helix 26
AC8
U
593 603Right-handed alpha
Helix 27
AC9
U
652 656Right-handed 310
Helix 28
AD1
U
700 704Right-handed 310
Helix 29
AD2
U
742 747Right-handed alpha
Helix 30
AD3
U
748 752Right-handed 310
Helix 31
AD4
U
775 780Right-handed alpha
Helix 32
AD5
U
789 802Right-handed alpha
Helix 33
AD6
U
803 806Right-handed 310
Helix 34
AD7
U
828 833Right-handed alpha
Helix 35
AD8
U
834 836Right-handed 310
Helix 36
AD9
U
838 842Right-handed 310
Helix 37
AE1
U
843 847Right-handed 310
Helix 38
AE2
U
875 881Right-handed alpha
Helix 39
AE3
U
885 897Right-handed alpha
Helix 40
AE4
U
904 907Right-handed 310
Helix 41
AE5
U
908 913Right-handed alpha
Helix 42
AE6
U
925 930Right-handed alpha
Helix 43
AE7
U
935 940Right-handed alpha
Helix 44
AE8
U
940 945Right-handed alpha
Helix 45
AE9
U
946 951Right-handed alpha
Helix 46
AF1
U
956 962Right-handed alpha
Helix 47
AF2
U
994 1007Right-handed alpha
Helix 48
AF3
U
1013 1015Right-handed 310
Helix 49
AF4
U
1016 1021Right-handed alpha
Helix 50
AF5
U
1031 1035Right-handed 310
Helix 51
AF6
U
1037 1043Right-handed alpha
Helix 52
AF7
U
1048 1053Right-handed alpha
Helix 53
AF8
U
1120 1125Right-handed alpha
Helix 54
AF9
U
1148 1153Right-handed alpha
Helix 55
AG1
U
1171 1176Right-handed alpha
Helix 56
AG2
U
1185 1191Right-handed alpha
Helix 57
AG3
U
1200 1204Right-handed 310
Helix 58
AG4
U
1220 1223Right-handed 310
Helix 59
AG5
U
1224 1233Right-handed alpha
Helix 60
AG6
U
1250 1264Right-handed alpha
Helix 61
AG7
U
1308 1314Right-handed alpha
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There are 4 sheets in PDB entry 6LR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
438 445first strand
Strand 2
U
420 427anti-parallel
Strand 3
U
479 480anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
450 451first strand
Strand 2
U
609 613parallel
Strand 3
U
579 583parallel
Strand 4
U
498 501parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
1079 1080first strand
Strand 2
U
1137 1138anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
1156 1159first strand
Strand 2
U
1239 1242parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il