Analysis of interatomic Contacts of Structural Units in PDB entry:
6LR7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LR7 entry

There are 3 chains in PDB entry 6LR7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4PHE 64
A
 VAL 68TYR 237
B
 VAL 3SER 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6LR7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
56 61Right-handed 310
Helix 4
AA4
A
68 72Right-handed 310
Helix 5
AA5
A
75 81Right-handed 310
Helix 6
AA6
A
82 87Right-handed alpha
Helix 7
AA7
B
63 66Right-handed 310
Helix 8
AA8
B
88 92Right-handed 310
Helix 9
AA9
B
105 115Right-handed 310
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There are 4 sheets in PDB entry 6LR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
217 230anti-parallel
Strand 3
A
199 208anti-parallel
Strand 4
A
148 155anti-parallel
Strand 5
A
160 170anti-parallel
Strand 6
A
176 187anti-parallel
Strand 7
A
92 100anti-parallel
Strand 8
A
105 115anti-parallel
Strand 9
A
118 128anti-parallel
Strand 10
A
12 22parallel
Strand 11
A
25 36anti-parallel
Strand 12
A
41 48anti-parallel
Strand 13
A
217 230anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 74anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
122 126parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
47 53anti-parallel
Strand 6
B
59 61anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
122 126parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
117 118anti-parallel
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