Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LRB entry

There are 6 chains in PDB entry 6LRB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 304	GLY 718
B	ASP 306	GLY 718
C	LYS 305	GLY 718
D	GLU 303	GLY 718
E	GLU 303	GLY 718
F	LYS 305	GLY 718

There are120 helices in PDB entry 6LRB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	308	317	Right-handed alpha
Helix 2	AA2	A	342	355	Right-handed alpha
Helix 3	AA3	A	392	396	Right-handed 310
Helix 4	AA4	A	404	415	Right-handed alpha
Helix 5	AA5	A	418	436	Right-handed alpha
Helix 6	AA6	A	452	465	Right-handed alpha
Helix 7	AA7	A	473	479	Right-handed alpha
Helix 8	AA8	A	482	486	Right-handed 310
Helix 9	AA9	A	506	508	Right-handed 310
Helix 10	AB1	A	509	517	Right-handed alpha
Helix 11	AB2	A	565	569	Right-handed 310
Helix 12	AB3	A	575	583	Right-handed alpha
Helix 13	AB4	A	583	593	Right-handed alpha
Helix 14	AB5	A	607	618	Right-handed alpha
Helix 15	AB6	A	619	630	Right-handed alpha
Helix 16	AB7	A	632	639	Right-handed alpha
Helix 17	AB8	A	642	647	Right-handed alpha
Helix 18	AB9	A	651	665	Right-handed alpha
Helix 19	AC1	A	669	681	Right-handed alpha
Helix 20	AC2	A	685	693	Right-handed alpha
Helix 21	AC3	B	308	317	Right-handed alpha
Helix 22	AC4	B	342	355	Right-handed alpha
Helix 23	AC5	B	392	396	Right-handed 310
Helix 24	AC6	B	404	415	Right-handed alpha
Helix 25	AC7	B	418	436	Right-handed alpha
Helix 26	AC8	B	452	465	Right-handed alpha
Helix 27	AC9	B	473	479	Right-handed alpha
Helix 28	AD1	B	482	486	Right-handed 310
Helix 29	AD2	B	506	509	Right-handed 310
Helix 30	AD3	B	510	517	Right-handed alpha
Helix 31	AD4	B	565	569	Right-handed 310
Helix 32	AD5	B	575	583	Right-handed alpha
Helix 33	AD6	B	583	593	Right-handed alpha
Helix 34	AD7	B	607	618	Right-handed alpha
Helix 35	AD8	B	619	630	Right-handed alpha
Helix 36	AD9	B	632	639	Right-handed alpha
Helix 37	AE1	B	642	647	Right-handed alpha
Helix 38	AE2	B	651	665	Right-handed alpha
Helix 39	AE3	B	669	681	Right-handed alpha
Helix 40	AE4	B	685	693	Right-handed alpha
Helix 41	AE5	C	308	317	Right-handed alpha
Helix 42	AE6	C	342	355	Right-handed alpha
Helix 43	AE7	C	392	396	Right-handed 310
Helix 44	AE8	C	404	415	Right-handed alpha
Helix 45	AE9	C	418	436	Right-handed alpha
Helix 46	AF1	C	452	465	Right-handed alpha
Helix 47	AF2	C	473	479	Right-handed alpha
Helix 48	AF3	C	482	486	Right-handed 310
Helix 49	AF4	C	506	509	Right-handed 310
Helix 50	AF5	C	510	517	Right-handed alpha
Helix 51	AF6	C	565	569	Right-handed 310
Helix 52	AF7	C	575	583	Right-handed alpha
Helix 53	AF8	C	583	593	Right-handed alpha
Helix 54	AF9	C	607	618	Right-handed alpha
Helix 55	AG1	C	619	630	Right-handed alpha
Helix 56	AG2	C	632	639	Right-handed alpha
Helix 57	AG3	C	642	647	Right-handed alpha
Helix 58	AG4	C	651	665	Right-handed alpha
Helix 59	AG5	C	669	681	Right-handed alpha
Helix 60	AG6	C	685	693	Right-handed alpha
Helix 61	AG7	D	308	317	Right-handed alpha
Helix 62	AG8	D	342	355	Right-handed alpha
Helix 63	AG9	D	392	396	Right-handed 310
Helix 64	AH1	D	404	415	Right-handed alpha
Helix 65	AH2	D	418	436	Right-handed alpha
Helix 66	AH3	D	452	465	Right-handed alpha
Helix 67	AH4	D	473	479	Right-handed alpha
Helix 68	AH5	D	482	486	Right-handed 310
Helix 69	AH6	D	506	509	Right-handed 310
Helix 70	AH7	D	510	517	Right-handed alpha
Helix 71	AH8	D	565	569	Right-handed 310
Helix 72	AH9	D	575	583	Right-handed alpha
Helix 73	AI1	D	583	593	Right-handed alpha
Helix 74	AI2	D	607	618	Right-handed alpha
Helix 75	AI3	D	619	630	Right-handed alpha
Helix 76	AI4	D	632	639	Right-handed alpha
Helix 77	AI5	D	642	647	Right-handed alpha
Helix 78	AI6	D	651	665	Right-handed alpha
Helix 79	AI7	D	669	681	Right-handed alpha
Helix 80	AI8	D	685	693	Right-handed alpha
Helix 81	AI9	E	308	317	Right-handed alpha
Helix 82	AJ1	E	342	355	Right-handed alpha
Helix 83	AJ2	E	392	396	Right-handed 310
Helix 84	AJ3	E	404	415	Right-handed alpha
Helix 85	AJ4	E	418	436	Right-handed alpha
Helix 86	AJ5	E	452	465	Right-handed alpha
Helix 87	AJ6	E	473	479	Right-handed alpha
Helix 88	AJ7	E	482	486	Right-handed 310
Helix 89	AJ8	E	506	509	Right-handed 310
Helix 90	AJ9	E	510	517	Right-handed alpha
Helix 91	AK1	E	565	569	Right-handed 310
Helix 92	AK2	E	575	583	Right-handed alpha
Helix 93	AK3	E	583	593	Right-handed alpha
Helix 94	AK4	E	607	618	Right-handed alpha
Helix 95	AK5	E	619	630	Right-handed alpha
Helix 96	AK6	E	632	639	Right-handed alpha
Helix 97	AK7	E	642	647	Right-handed alpha
Helix 98	AK8	E	651	665	Right-handed alpha
Helix 99	AK9	E	669	681	Right-handed alpha
Helix 100	AL1	E	685	693	Right-handed alpha
Helix 101	AL2	F	308	317	Right-handed alpha
Helix 102	AL3	F	342	355	Right-handed alpha
Helix 103	AL4	F	392	396	Right-handed 310
Helix 104	AL5	F	404	415	Right-handed alpha
Helix 105	AL6	F	418	436	Right-handed alpha
Helix 106	AL7	F	452	465	Right-handed alpha
Helix 107	AL8	F	473	479	Right-handed alpha
Helix 108	AL9	F	482	486	Right-handed 310
Helix 109	AM1	F	506	509	Right-handed 310
Helix 110	AM2	F	510	517	Right-handed alpha
Helix 111	AM3	F	565	569	Right-handed 310
Helix 112	AM4	F	575	583	Right-handed alpha
Helix 113	AM5	F	583	593	Right-handed alpha
Helix 114	AM6	F	607	618	Right-handed alpha
Helix 115	AM7	F	619	630	Right-handed alpha
Helix 116	AM8	F	632	639	Right-handed alpha
Helix 117	AM9	F	642	647	Right-handed alpha
Helix 118	AN1	F	651	665	Right-handed alpha
Helix 119	AN2	F	669	681	Right-handed alpha
Helix 120	AN3	F	685	693	Right-handed alpha

There are 24 sheets in PDB entry 6LRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	320	324	anti-parallel
Strand 4	A	365	369	parallel
Strand 5	A	383	387	parallel
Strand 6	A	377	380	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	472	first strand
Strand 2	A	490	494	parallel
Strand 3	A	538	541	parallel
Strand 4	A	442	446	parallel
Strand 5	A	557	561	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	522	first strand
Strand 2	A	530	533	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	668	first strand
Strand 2	A	711	717	anti-parallel
Strand 3	A	700	706	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	329	334	anti-parallel
Strand 3	B	320	324	anti-parallel
Strand 4	B	365	369	parallel
Strand 5	B	385	387	parallel
Strand 6	B	377	378	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	472	first strand
Strand 2	B	490	494	parallel
Strand 3	B	538	541	parallel
Strand 4	B	442	446	parallel
Strand 5	B	557	561	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	522	first strand
Strand 2	B	530	533	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	668	first strand
Strand 2	B	710	717	anti-parallel
Strand 3	B	700	707	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	341	first strand
Strand 2	C	330	334	anti-parallel
Strand 3	C	320	324	anti-parallel
Strand 4	C	365	369	parallel
Strand 5	C	385	387	parallel
Strand 6	C	377	378	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	468	472	first strand
Strand 2	C	490	494	parallel
Strand 3	C	538	542	parallel
Strand 4	C	442	446	parallel
Strand 5	C	557	561	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	522	first strand
Strand 2	C	530	533	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	666	668	first strand
Strand 2	C	711	717	anti-parallel
Strand 3	C	700	706	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	341	first strand
Strand 2	D	330	334	anti-parallel
Strand 3	D	320	324	anti-parallel
Strand 4	D	365	369	parallel
Strand 5	D	383	387	parallel
Strand 6	D	377	380	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	468	472	first strand
Strand 2	D	490	494	parallel
Strand 3	D	538	541	parallel
Strand 4	D	442	446	parallel
Strand 5	D	557	561	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	522	first strand
Strand 2	D	530	533	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	666	668	first strand
Strand 2	D	711	717	anti-parallel
Strand 3	D	700	706	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	341	first strand
Strand 2	E	329	334	anti-parallel
Strand 3	E	320	324	anti-parallel
Strand 4	E	365	369	parallel
Strand 5	E	383	387	parallel
Strand 6	E	377	380	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	468	472	first strand
Strand 2	E	490	494	parallel
Strand 3	E	538	541	parallel
Strand 4	E	442	446	parallel
Strand 5	E	557	561	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	519	522	first strand
Strand 2	E	530	533	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	666	668	first strand
Strand 2	E	711	717	anti-parallel
Strand 3	E	700	706	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	337	341	first strand
Strand 2	F	330	334	anti-parallel
Strand 3	F	320	324	anti-parallel
Strand 4	F	365	369	parallel
Strand 5	F	383	387	parallel
Strand 6	F	377	380	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	468	472	first strand
Strand 2	F	490	494	parallel
Strand 3	F	538	541	parallel
Strand 4	F	442	446	parallel
Strand 5	F	557	561	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	519	522	first strand
Strand 2	F	530	533	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	666	668	first strand
Strand 2	F	710	717	anti-parallel
Strand 3	F	700	707	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LRB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRB