Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LRH entry

There are 2 chains in PDB entry 6LRH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	PRO 697
B	ARG 4	LEU 694

There are 62 helices in PDB entry 6LRH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	49	Right-handed alpha
Helix 2	AA2	A	63	71	Right-handed 310
Helix 3	AA3	A	87	92	Right-handed alpha
Helix 4	AA4	A	93	103	Right-handed alpha
Helix 5	AA5	A	118	121	Right-handed 310
Helix 6	AA6	A	141	143	Right-handed 310
Helix 7	AA7	A	144	153	Right-handed alpha
Helix 8	AA8	A	168	171	Right-handed 310
Helix 9	AA9	A	177	179	Right-handed 310
Helix 10	AB1	A	185	188	Right-handed 310
Helix 11	AB2	A	189	200	Right-handed alpha
Helix 12	AB3	A	201	203	Right-handed 310
Helix 13	AB4	A	209	214	Right-handed alpha
Helix 14	AB5	A	233	243	Right-handed alpha
Helix 15	AB6	A	252	257	Right-handed alpha
Helix 16	AB7	A	262	266	Right-handed 310
Helix 17	AB8	A	298	310	Right-handed alpha
Helix 18	AB9	A	339	353	Right-handed alpha
Helix 19	AC1	A	359	362	Right-handed 310
Helix 20	AC2	A	423	427	Right-handed 310
Helix 21	AC3	A	466	487	Right-handed alpha
Helix 22	AC4	A	497	503	Right-handed alpha
Helix 23	AC5	A	504	514	Right-handed alpha
Helix 24	AC6	A	524	537	Right-handed alpha
Helix 25	AC7	A	554	568	Right-handed alpha
Helix 26	AC8	A	569	576	Right-handed alpha
Helix 27	AC9	A	582	590	Right-handed alpha
Helix 28	AD1	A	612	625	Right-handed alpha
Helix 29	AD2	A	635	646	Right-handed alpha
Helix 30	AD3	A	659	660	Right-handed 310
Helix 31	AD4	A	663	666	Right-handed 310
Helix 32	AD5	A	679	694	Right-handed alpha
Helix 33	AD6	B	22	26	Right-handed 310
Helix 34	AD7	B	33	50	Right-handed alpha
Helix 35	AD8	B	63	71	Right-handed 310
Helix 36	AD9	B	87	92	Right-handed alpha
Helix 37	AE1	B	93	103	Right-handed alpha
Helix 38	AE2	B	118	121	Right-handed 310
Helix 39	AE3	B	141	143	Right-handed 310
Helix 40	AE4	B	144	153	Right-handed alpha
Helix 41	AE5	B	168	172	Right-handed 310
Helix 42	AE6	B	176	180	Right-handed 310
Helix 43	AE7	B	184	188	Right-handed 310
Helix 44	AE8	B	189	200	Right-handed alpha
Helix 45	AE9	B	209	214	Right-handed alpha
Helix 46	AF1	B	233	242	Right-handed alpha
Helix 47	AF2	B	252	257	Right-handed alpha
Helix 48	AF3	B	262	266	Right-handed 310
Helix 49	AF4	B	293	298	Right-handed alpha
Helix 50	AF5	B	298	311	Right-handed alpha
Helix 51	AF6	B	339	353	Right-handed alpha
Helix 52	AF7	B	423	427	Right-handed 310
Helix 53	AF8	B	469	487	Right-handed alpha
Helix 54	AF9	B	497	502	Right-handed alpha
Helix 55	AG1	B	504	514	Right-handed alpha
Helix 56	AG2	B	524	537	Right-handed alpha
Helix 57	AG3	B	554	568	Right-handed alpha
Helix 58	AG4	B	569	576	Right-handed alpha
Helix 59	AG5	B	582	590	Right-handed alpha
Helix 60	AG6	B	612	625	Right-handed alpha
Helix 61	AG7	B	636	646	Right-handed alpha
Helix 62	AG8	B	679	690	Right-handed alpha

There are 18 sheets in PDB entry 6LRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	6	9	parallel
Strand 3	A	267	268	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	79	82	anti-parallel
Strand 3	A	107	109	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	132	136	anti-parallel
Strand 3	A	155	160	parallel
Strand 4	A	280	281	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	181	183	anti-parallel
Strand 3	A	205	207	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	226	229	anti-parallel
Strand 3	A	246	249	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	320	first strand
Strand 2	A	329	337	anti-parallel
Strand 3	A	284	292	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	432	435	anti-parallel
Strand 3	A	407	413	anti-parallel
Strand 4	A	416	422	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	398	first strand
Strand 2	A	388	392	anti-parallel
Strand 3	A	440	442	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	610	first strand
Strand 2	A	594	597	parallel
Strand 3	A	519	523	parallel
Strand 4	A	491	495	parallel
Strand 5	A	629	633	parallel
Strand 6	A	651	655	parallel
Strand 7	A	673	676	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	542	543	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	6	9	parallel
Strand 3	B	267	268	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	79	82	anti-parallel
Strand 3	B	107	109	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	132	136	anti-parallel
Strand 3	B	155	160	parallel
Strand 4	B	280	281	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	205	207	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	226	229	anti-parallel
Strand 3	B	246	249	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	292	first strand
Strand 2	B	329	337	anti-parallel
Strand 3	B	313	320	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	369	first strand
Strand 2	B	432	435	anti-parallel
Strand 3	B	407	413	anti-parallel
Strand 4	B	416	422	anti-parallel
Strand 5	B	395	400	parallel
Strand 6	B	388	392	anti-parallel
Strand 7	B	440	442	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	597	first strand
Strand 2	B	519	523	parallel
Strand 3	B	491	495	parallel
Strand 4	B	629	633	parallel
Strand 5	B	651	655	parallel
Strand 6	B	673	676	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LRH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRH