Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LRI entry

There are 2 chains in PDB entry 6LRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 161PHE 522
B
 GLY 161ASP 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6LRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 175Right-handed alpha
Helix 2
AA2
A
187 199Right-handed alpha
Helix 3
AA3
A
262 266Right-handed 310
Helix 4
AA4
A
272 288Right-handed alpha
Helix 5
AA5
A
289 291Right-handed 310
Helix 6
AA6
A
331 335Right-handed 310
Helix 7
AA7
A
345 354Right-handed alpha
Helix 8
AA8
A
379 389Right-handed alpha
Helix 9
AA9
A
405 424Right-handed alpha
Helix 10
AB1
A
434 449Right-handed alpha
Helix 11
AB2
A
451 458Right-handed 310
Helix 12
AB3
A
459 477Right-handed alpha
Helix 13
AB4
A
497 514Right-handed alpha
Helix 14
AB5
A
517 522Right-handed alpha
Helix 15
AB6
B
162 175Right-handed alpha
Helix 16
AB7
B
185 200Right-handed alpha
Helix 17
AB8
B
262 264Right-handed 310
Helix 18
AB9
B
272 288Right-handed alpha
Helix 19
AC1
B
331 335Right-handed 310
Helix 20
AC2
B
345 353Right-handed alpha
Helix 21
AC3
B
379 388Right-handed alpha
Helix 22
AC4
B
399 403Right-handed 310
Helix 23
AC5
B
405 424Right-handed alpha
Helix 24
AC6
B
434 449Right-handed alpha
Helix 25
AC7
B
451 458Right-handed 310
Helix 26
AC8
B
459 478Right-handed alpha
Helix 27
AC9
B
497 514Right-handed alpha
Helix 28
AD1
B
515 520Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6LRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
317 326parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
375 378anti-parallel
Strand 6
A
248 252anti-parallel
Strand 7
A
238 241anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
317 326parallel
Strand 4
A
308 312anti-parallel
Strand 5
A
296 297anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
317 326parallel
Strand 4
B
357 361anti-parallel
Strand 5
B
375 378anti-parallel
Strand 6
B
248 253anti-parallel
Strand 7
B
237 241anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
317 326parallel
Strand 4
B
308 310anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
270 271anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il