Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LRJ entry

There are 2 chains in PDB entry 6LRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 162PHE 519
B
 GLY 161PHE 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6LRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
162 174Right-handed alpha
Helix 2
AA2
A
175 177Right-handed 310
Helix 3
AA3
A
183 200Right-handed alpha
Helix 4
AA4
A
201 204Right-handed 310
Helix 5
AA5
A
262 266Right-handed 310
Helix 6
AA6
A
272 288Right-handed alpha
Helix 7
AA7
A
289 291Right-handed 310
Helix 8
AA8
A
331 335Right-handed 310
Helix 9
AA9
A
345 355Right-handed alpha
Helix 10
AB1
A
379 389Right-handed alpha
Helix 11
AB2
A
405 424Right-handed alpha
Helix 12
AB3
A
425 428Right-handed 310
Helix 13
AB4
A
434 449Right-handed alpha
Helix 14
AB5
A
451 458Right-handed 310
Helix 15
AB6
A
459 478Right-handed alpha
Helix 16
AB7
A
497 514Right-handed alpha
Helix 17
AB8
B
162 174Right-handed alpha
Helix 18
AB9
B
180 200Right-handed alpha
Helix 19
AC1
B
260 264Right-handed 310
Helix 20
AC2
B
272 288Right-handed alpha
Helix 21
AC3
B
331 335Right-handed 310
Helix 22
AC4
B
345 354Right-handed alpha
Helix 23
AC5
B
379 389Right-handed alpha
Helix 24
AC6
B
399 403Right-handed 310
Helix 25
AC7
B
405 424Right-handed alpha
Helix 26
AC8
B
434 449Right-handed alpha
Helix 27
AC9
B
451 458Right-handed 310
Helix 28
AD1
B
459 478Right-handed alpha
Helix 29
AD2
B
497 514Right-handed alpha
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There are 5 sheets in PDB entry 6LRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
317 326parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
375 378anti-parallel
Strand 6
A
248 252anti-parallel
Strand 7
A
238 241anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
317 326parallel
Strand 4
A
306 311anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
317 326parallel
Strand 4
B
357 361anti-parallel
Strand 5
B
375 378anti-parallel
Strand 6
B
248 252anti-parallel
Strand 7
B
238 241anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
317 326parallel
Strand 4
B
308 311anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
270 271anti-parallel
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