Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LRP entry

There is 1 chain in PDB entry 6LRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20ILE 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6LRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 35Right-handed alpha
Helix 2
AA2
A
42 59Right-handed alpha
Helix 3
AA3
A
69 79Right-handed alpha
Helix 4
AA4
A
87 95Right-handed alpha
Helix 5
AA5
A
111 134Right-handed alpha
Helix 6
AA6
A
155 170Right-handed alpha
Helix 7
AA7
A
180 184Right-handed 310
Helix 8
AA8
A
196 215Right-handed alpha
Helix 9
AA9
A
240 242Right-handed 310
Helix 10
AB1
A
259 271Right-handed alpha
Helix 11
AB2
A
272 274Right-handed 310
Helix 12
AB3
A
285 300Right-handed alpha
Helix 13
AB4
A
314 319Right-handed alpha
Helix 14
AB5
A
320 335Right-handed alpha
Helix 15
AB6
A
343 364Right-handed alpha
Helix 16
AB7
A
364 379Right-handed alpha
Helix 17
AB8
A
380 382Right-handed 310
Helix 18
AB9
A
387 392Right-handed alpha
Helix 19
AC1
A
393 407Right-handed alpha
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There are 2 sheets in PDB entry 6LRP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
336 341parallel
Strand 3
A
304 308parallel
Strand 4
A
276 279parallel
Strand 5
A
219 224parallel
Strand 6
A
173 177parallel
Strand 7
A
145 148parallel
Strand 8
A
84 86parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
231 232parallel
Strand 3
A
254 256anti-parallel
Strand 4
A
244 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il