Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LRT entry

There are 8 chains in PDB entry 6LRT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 423
D	MET 1	PHE 423
G	MET 1	PHE 423
J	MET 1	PHE 423
M	MET 1	PHE 423
P	MET 1	PHE 423
S	MET 1	PHE 423
V	MET 1	PHE 423

There are168 helices in PDB entry 6LRT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	15	Right-handed alpha
Helix 2	AA2	A	27	35	Right-handed alpha
Helix 3	AA3	A	42	59	Right-handed alpha
Helix 4	AA4	A	69	80	Right-handed alpha
Helix 5	AA5	A	87	95	Right-handed alpha
Helix 6	AA6	A	111	134	Right-handed alpha
Helix 7	AA7	A	155	169	Right-handed alpha
Helix 8	AA8	A	180	184	Right-handed 310
Helix 9	AA9	A	196	214	Right-handed alpha
Helix 10	AB1	A	240	242	Right-handed 310
Helix 11	AB2	A	259	271	Right-handed alpha
Helix 12	AB3	A	272	274	Right-handed 310
Helix 13	AB4	A	285	298	Right-handed alpha
Helix 14	AB5	A	314	319	Right-handed alpha
Helix 15	AB6	A	320	334	Right-handed alpha
Helix 16	AB7	A	343	364	Right-handed alpha
Helix 17	AB8	A	364	379	Right-handed alpha
Helix 18	AB9	A	380	382	Right-handed 310
Helix 19	AC1	A	387	392	Right-handed alpha
Helix 20	AC2	A	393	406	Right-handed alpha
Helix 21	AC3	A	417	423	Right-handed alpha
Helix 22	AC4	D	2	15	Right-handed alpha
Helix 23	AC5	D	27	36	Right-handed alpha
Helix 24	AC6	D	42	59	Right-handed alpha
Helix 25	AC7	D	69	79	Right-handed alpha
Helix 26	AC8	D	87	95	Right-handed alpha
Helix 27	AC9	D	111	134	Right-handed alpha
Helix 28	AD1	D	155	170	Right-handed alpha
Helix 29	AD2	D	180	184	Right-handed 310
Helix 30	AD3	D	196	214	Right-handed alpha
Helix 31	AD4	D	240	242	Right-handed 310
Helix 32	AD5	D	259	271	Right-handed alpha
Helix 33	AD6	D	272	274	Right-handed 310
Helix 34	AD7	D	285	300	Right-handed alpha
Helix 35	AD8	D	314	319	Right-handed alpha
Helix 36	AD9	D	320	325	Right-handed alpha
Helix 37	AE1	D	326	335	Right-handed alpha
Helix 38	AE2	D	343	364	Right-handed alpha
Helix 39	AE3	D	364	378	Right-handed alpha
Helix 40	AE4	D	379	382	Right-handed 310
Helix 41	AE5	D	387	392	Right-handed alpha
Helix 42	AE6	D	393	406	Right-handed alpha
Helix 43	AE7	D	417	423	Right-handed alpha
Helix 44	AE8	G	2	15	Right-handed alpha
Helix 45	AE9	G	27	34	Right-handed alpha
Helix 46	AF1	G	42	59	Right-handed alpha
Helix 47	AF2	G	69	80	Right-handed alpha
Helix 48	AF3	G	87	95	Right-handed alpha
Helix 49	AF4	G	111	134	Right-handed alpha
Helix 50	AF5	G	155	170	Right-handed alpha
Helix 51	AF6	G	180	184	Right-handed 310
Helix 52	AF7	G	196	214	Right-handed alpha
Helix 53	AF8	G	240	242	Right-handed 310
Helix 54	AF9	G	259	271	Right-handed alpha
Helix 55	AG1	G	272	274	Right-handed 310
Helix 56	AG2	G	285	300	Right-handed alpha
Helix 57	AG3	G	314	319	Right-handed alpha
Helix 58	AG4	G	320	334	Right-handed alpha
Helix 59	AG5	G	343	364	Right-handed alpha
Helix 60	AG6	G	364	378	Right-handed alpha
Helix 61	AG7	G	379	382	Right-handed 310
Helix 62	AG8	G	387	393	Right-handed alpha
Helix 63	AG9	G	393	406	Right-handed alpha
Helix 64	AH1	J	2	15	Right-handed alpha
Helix 65	AH2	J	16	20	Right-handed 310
Helix 66	AH3	J	27	35	Right-handed alpha
Helix 67	AH4	J	42	59	Right-handed alpha
Helix 68	AH5	J	69	79	Right-handed alpha
Helix 69	AH6	J	87	95	Right-handed alpha
Helix 70	AH7	J	111	134	Right-handed alpha
Helix 71	AH8	J	155	170	Right-handed alpha
Helix 72	AH9	J	180	184	Right-handed 310
Helix 73	AI1	J	196	215	Right-handed alpha
Helix 74	AI2	J	237	242	Right-handed 310
Helix 75	AI3	J	259	271	Right-handed alpha
Helix 76	AI4	J	272	274	Right-handed 310
Helix 77	AI5	J	285	300	Right-handed alpha
Helix 78	AI6	J	314	319	Right-handed alpha
Helix 79	AI7	J	320	334	Right-handed alpha
Helix 80	AI8	J	343	364	Right-handed alpha
Helix 81	AI9	J	364	379	Right-handed alpha
Helix 82	AJ1	J	380	382	Right-handed 310
Helix 83	AJ2	J	387	392	Right-handed alpha
Helix 84	AJ3	J	393	406	Right-handed alpha
Helix 85	AJ4	J	417	423	Right-handed alpha
Helix 86	AJ5	M	2	15	Right-handed alpha
Helix 87	AJ6	M	27	35	Right-handed alpha
Helix 88	AJ7	M	42	59	Right-handed alpha
Helix 89	AJ8	M	69	80	Right-handed alpha
Helix 90	AJ9	M	87	95	Right-handed alpha
Helix 91	AK1	M	111	134	Right-handed alpha
Helix 92	AK2	M	155	169	Right-handed alpha
Helix 93	AK3	M	180	184	Right-handed 310
Helix 94	AK4	M	196	214	Right-handed alpha
Helix 95	AK5	M	240	242	Right-handed 310
Helix 96	AK6	M	259	271	Right-handed alpha
Helix 97	AK7	M	272	274	Right-handed 310
Helix 98	AK8	M	285	298	Right-handed alpha
Helix 99	AK9	M	314	319	Right-handed alpha
Helix 100	AL1	M	320	334	Right-handed alpha
Helix 101	AL2	M	343	364	Right-handed alpha
Helix 102	AL3	M	364	378	Right-handed alpha
Helix 103	AL4	M	379	382	Right-handed 310
Helix 104	AL5	M	387	392	Right-handed alpha
Helix 105	AL6	M	393	405	Right-handed alpha
Helix 106	AL7	M	417	423	Right-handed alpha
Helix 107	AL8	P	2	15	Right-handed alpha
Helix 108	AL9	P	27	36	Right-handed alpha
Helix 109	AM1	P	42	57	Right-handed alpha
Helix 110	AM2	P	69	79	Right-handed alpha
Helix 111	AM3	P	87	95	Right-handed alpha
Helix 112	AM4	P	111	134	Right-handed alpha
Helix 113	AM5	P	155	170	Right-handed alpha
Helix 114	AM6	P	180	184	Right-handed 310
Helix 115	AM7	P	196	214	Right-handed alpha
Helix 116	AM8	P	237	242	Right-handed 310
Helix 117	AM9	P	259	271	Right-handed alpha
Helix 118	AN1	P	272	274	Right-handed 310
Helix 119	AN2	P	285	300	Right-handed alpha
Helix 120	AN3	P	314	319	Right-handed alpha
Helix 121	AN4	P	320	334	Right-handed alpha
Helix 122	AN5	P	343	364	Right-handed alpha
Helix 123	AN6	P	364	378	Right-handed alpha
Helix 124	AN7	P	379	382	Right-handed 310
Helix 125	AN8	P	387	392	Right-handed alpha
Helix 126	AN9	P	393	405	Right-handed alpha
Helix 127	AO1	P	417	423	Right-handed alpha
Helix 128	AO2	S	2	15	Right-handed alpha
Helix 129	AO3	S	27	35	Right-handed alpha
Helix 130	AO4	S	42	59	Right-handed alpha
Helix 131	AO5	S	69	79	Right-handed alpha
Helix 132	AO6	S	87	95	Right-handed alpha
Helix 133	AO7	S	111	134	Right-handed alpha
Helix 134	AO8	S	155	170	Right-handed alpha
Helix 135	AO9	S	180	184	Right-handed 310
Helix 136	AP1	S	196	215	Right-handed alpha
Helix 137	AP2	S	240	242	Right-handed 310
Helix 138	AP3	S	259	271	Right-handed alpha
Helix 139	AP4	S	285	300	Right-handed alpha
Helix 140	AP5	S	314	319	Right-handed alpha
Helix 141	AP6	S	320	334	Right-handed alpha
Helix 142	AP7	S	343	364	Right-handed alpha
Helix 143	AP8	S	364	378	Right-handed alpha
Helix 144	AP9	S	379	382	Right-handed 310
Helix 145	AQ1	S	387	392	Right-handed alpha
Helix 146	AQ2	S	393	405	Right-handed alpha
Helix 147	AQ3	S	417	423	Right-handed alpha
Helix 148	AQ4	V	2	15	Right-handed alpha
Helix 149	AQ5	V	27	35	Right-handed alpha
Helix 150	AQ6	V	42	57	Right-handed alpha
Helix 151	AQ7	V	69	79	Right-handed alpha
Helix 152	AQ8	V	87	95	Right-handed alpha
Helix 153	AQ9	V	111	134	Right-handed alpha
Helix 154	AR1	V	155	170	Right-handed alpha
Helix 155	AR2	V	180	184	Right-handed 310
Helix 156	AR3	V	196	214	Right-handed alpha
Helix 157	AR4	V	240	242	Right-handed 310
Helix 158	AR5	V	259	271	Right-handed alpha
Helix 159	AR6	V	272	274	Right-handed 310
Helix 160	AR7	V	285	300	Right-handed alpha
Helix 161	AR8	V	314	319	Right-handed alpha
Helix 162	AR9	V	320	335	Right-handed alpha
Helix 163	AS1	V	343	364	Right-handed alpha
Helix 164	AS2	V	364	379	Right-handed alpha
Helix 165	AS3	V	380	382	Right-handed 310
Helix 166	AS4	V	387	392	Right-handed alpha
Helix 167	AS5	V	393	406	Right-handed alpha
Helix 168	AS6	V	417	423	Right-handed alpha

There are 17 sheets in PDB entry 6LRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	67	first strand
Strand 2	A	84	86	parallel
Strand 3	A	145	148	parallel
Strand 4	A	173	177	parallel
Strand 5	A	219	224	parallel
Strand 6	A	276	279	parallel
Strand 7	A	304	308	parallel
Strand 8	A	336	341	parallel
Strand 9	A	62	67	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	231	232	parallel
Strand 3	A	254	256	anti-parallel
Strand 4	A	244	248	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	67	first strand
Strand 2	D	84	86	parallel
Strand 3	D	145	148	parallel
Strand 4	D	173	177	parallel
Strand 5	D	219	224	parallel
Strand 6	D	276	279	parallel
Strand 7	D	304	308	parallel
Strand 8	D	336	341	parallel
Strand 9	D	62	67	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	231	232	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	248	first strand
Strand 2	D	254	256	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	65	first strand
Strand 2	G	336	341	parallel
Strand 3	G	304	308	parallel
Strand 4	G	276	279	parallel
Strand 5	G	219	224	parallel
Strand 6	G	173	176	parallel
Strand 7	G	145	148	parallel
Strand 8	G	84	86	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	231	232	first strand
Strand 2	G	254	256	anti-parallel
Strand 3	G	244	248	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	62	67	first strand
Strand 2	J	84	86	parallel
Strand 3	J	145	148	parallel
Strand 4	J	173	177	parallel
Strand 5	J	219	224	parallel
Strand 6	J	276	279	parallel
Strand 7	J	304	308	parallel
Strand 8	J	336	341	parallel
Strand 9	J	62	67	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	193	194	first strand
Strand 2	J	231	232	parallel
Strand 3	J	254	256	anti-parallel
Strand 4	J	244	248	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	62	65	first strand
Strand 2	M	336	341	parallel
Strand 3	M	304	308	parallel
Strand 4	M	276	279	parallel
Strand 5	M	219	224	parallel
Strand 6	M	173	177	parallel
Strand 7	M	145	148	parallel
Strand 8	M	84	86	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	193	194	first strand
Strand 2	M	231	232	parallel
Strand 3	M	254	256	anti-parallel
Strand 4	M	244	248	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	62	67	first strand
Strand 2	P	84	86	parallel
Strand 3	P	145	148	parallel
Strand 4	P	173	177	parallel
Strand 5	P	219	224	parallel
Strand 6	P	276	279	parallel
Strand 7	P	304	308	parallel
Strand 8	P	336	341	parallel
Strand 9	P	62	67	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	193	194	first strand
Strand 2	P	231	232	parallel
Strand 3	P	254	256	anti-parallel
Strand 4	P	244	248	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	62	67	first strand
Strand 2	S	84	86	parallel
Strand 3	S	145	148	parallel
Strand 4	S	173	176	parallel
Strand 5	S	219	224	parallel
Strand 6	S	276	279	parallel
Strand 7	S	304	308	parallel
Strand 8	S	336	341	parallel
Strand 9	S	62	67	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	193	194	first strand
Strand 2	S	231	232	parallel
Strand 3	S	254	256	anti-parallel
Strand 4	S	244	248	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	62	67	first strand
Strand 2	V	84	86	parallel
Strand 3	V	145	148	parallel
Strand 4	V	173	177	parallel
Strand 5	V	219	224	parallel
Strand 6	V	276	279	parallel
Strand 7	V	304	308	parallel
Strand 8	V	336	341	parallel
Strand 9	V	62	67	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	193	194	first strand
Strand 2	V	231	232	parallel
Strand 3	V	254	256	anti-parallel
Strand 4	V	244	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LRT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LRT