Analysis of interatomic Contacts of Structural Units in PDB entry:
6LSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LSV entry

There are 2 chains in PDB entry 6LSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 18PRO 370
B
 ASP 18PRO 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6LSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 33Right-handed alpha
Helix 2
AA2
A
39 43Right-handed 310
Helix 3
AA3
A
79 92Right-handed alpha
Helix 4
AA4
A
103 120Right-handed alpha
Helix 5
AA5
A
121 129Right-handed 310
Helix 6
AA6
A
162 166Right-handed 310
Helix 7
AA7
A
167 171Right-handed 310
Helix 8
AA8
A
177 204Right-handed alpha
Helix 9
AA9
A
209 215Right-handed alpha
Helix 10
AB1
A
285 292Right-handed alpha
Helix 11
AB2
A
329 333Right-handed 310
Helix 12
AB3
A
346 350Right-handed alpha
Helix 13
AB4
A
350 357Right-handed alpha
Helix 14
AB5
A
361 366Right-handed alpha
Helix 15
AB6
B
26 32Right-handed alpha
Helix 16
AB7
B
39 43Right-handed 310
Helix 17
AB8
B
68 70Right-handed 310
Helix 18
AB9
B
82 92Right-handed alpha
Helix 19
AC1
B
103 120Right-handed alpha
Helix 20
AC2
B
121 129Right-handed 310
Helix 21
AC3
B
162 166Right-handed 310
Helix 22
AC4
B
167 171Right-handed 310
Helix 23
AC5
B
177 204Right-handed alpha
Helix 24
AC6
B
209 215Right-handed alpha
Helix 25
AC7
B
285 292Right-handed alpha
Helix 26
AC8
B
329 333Right-handed 310
Helix 27
AC9
B
346 350Right-handed alpha
Helix 28
AD1
B
350 357Right-handed alpha
Helix 29
AD2
B
361 366Right-handed alpha
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There are 6 sheets in PDB entry 6LSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
94 98parallel
Strand 3
A
280 284anti-parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
311 319anti-parallel
Strand 6
A
221 229anti-parallel
Strand 7
A
154 161anti-parallel
Strand 8
A
137 139anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
301 303anti-parallel
Strand 3
A
262 265anti-parallel
Strand 4
A
270 272anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
344 345anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
269 274parallel
Strand 3
B
262 266anti-parallel
Strand 4
B
301 303anti-parallel
Strand 5
B
241 244anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
94 98parallel
Strand 3
B
280 284anti-parallel
Strand 4
B
250 254anti-parallel
Strand 5
B
311 319anti-parallel
Strand 6
B
221 229anti-parallel
Strand 7
B
154 161anti-parallel
Strand 8
B
137 139anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 326first strand
Strand 2
B
344 345anti-parallel
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