Analysis of interatomic Contacts of Structural Units in PDB entry:
6LT0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LT0 entry

There are 6 chains in PDB entry 6LT0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 31	LEU 457
B	PHE 57	LYS 936
C	ALA 13	GLY 465
D	ASN 31	LEU 457
E	PHE 57	LYS 936
F	ALA 13	GLY 465

There are 72 helices in PDB entry 6LT0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	440	453	Right-handed alpha
Helix 2	AA2	B	96	101	Right-handed alpha
Helix 3	AA3	B	161	167	Right-handed alpha
Helix 4	AA4	B	168	174	Right-handed alpha
Helix 5	AA5	B	179	188	Right-handed alpha
Helix 6	AA6	B	330	345	Right-handed alpha
Helix 7	AA7	B	349	365	Right-handed alpha
Helix 8	AA8	B	367	372	Right-handed 310
Helix 9	AA9	B	702	715	Right-handed alpha
Helix 10	AB1	B	720	730	Right-handed alpha
Helix 11	AB2	B	739	751	Right-handed alpha
Helix 12	AB3	B	752	754	Right-handed 310
Helix 13	AB4	B	775	780	Right-handed alpha
Helix 14	AB5	B	796	801	Right-handed alpha
Helix 15	AB6	B	802	804	Right-handed 310
Helix 16	AB7	B	825	831	Right-handed alpha
Helix 17	AB8	B	840	864	Right-handed alpha
Helix 18	AB9	B	864	869	Right-handed alpha
Helix 19	AC1	B	876	891	Right-handed alpha
Helix 20	AC2	B	897	916	Right-handed alpha
Helix 21	AC3	C	56	68	Right-handed alpha
Helix 22	AC4	C	124	126	Right-handed 310
Helix 23	AC5	C	127	148	Right-handed alpha
Helix 24	AC6	C	173	193	Right-handed alpha
Helix 25	AC7	C	200	204	Right-handed 310
Helix 26	AC8	C	215	230	Right-handed alpha
Helix 27	AC9	C	241	252	Right-handed alpha
Helix 28	AD1	C	253	255	Right-handed 310
Helix 29	AD2	C	256	263	Right-handed alpha
Helix 30	AD3	C	294	300	Right-handed alpha
Helix 31	AD4	C	320	337	Right-handed alpha
Helix 32	AD5	C	375	385	Right-handed alpha
Helix 33	AD6	C	393	420	Right-handed alpha
Helix 34	AD7	C	429	437	Right-handed alpha
Helix 35	AD8	C	441	455	Right-handed alpha
Helix 36	AD9	C	458	464	Right-handed alpha
Helix 37	AE1	D	440	453	Right-handed alpha
Helix 38	AE2	E	96	101	Right-handed alpha
Helix 39	AE3	E	161	167	Right-handed alpha
Helix 40	AE4	E	168	174	Right-handed alpha
Helix 41	AE5	E	179	188	Right-handed alpha
Helix 42	AE6	E	330	345	Right-handed alpha
Helix 43	AE7	E	349	365	Right-handed alpha
Helix 44	AE8	E	367	372	Right-handed 310
Helix 45	AE9	E	702	715	Right-handed alpha
Helix 46	AF1	E	720	730	Right-handed alpha
Helix 47	AF2	E	739	751	Right-handed alpha
Helix 48	AF3	E	752	754	Right-handed 310
Helix 49	AF4	E	775	780	Right-handed alpha
Helix 50	AF5	E	796	801	Right-handed alpha
Helix 51	AF6	E	802	804	Right-handed 310
Helix 52	AF7	E	825	831	Right-handed alpha
Helix 53	AF8	E	840	864	Right-handed alpha
Helix 54	AF9	E	864	869	Right-handed alpha
Helix 55	AG1	E	876	891	Right-handed alpha
Helix 56	AG2	E	897	916	Right-handed alpha
Helix 57	AG3	F	56	68	Right-handed alpha
Helix 58	AG4	F	124	126	Right-handed 310
Helix 59	AG5	F	127	148	Right-handed alpha
Helix 60	AG6	F	173	193	Right-handed alpha
Helix 61	AG7	F	200	204	Right-handed 310
Helix 62	AG8	F	215	230	Right-handed alpha
Helix 63	AG9	F	241	252	Right-handed alpha
Helix 64	AH1	F	253	255	Right-handed 310
Helix 65	AH2	F	256	263	Right-handed alpha
Helix 66	AH3	F	294	300	Right-handed alpha
Helix 67	AH4	F	320	337	Right-handed alpha
Helix 68	AH5	F	375	385	Right-handed alpha
Helix 69	AH6	F	393	420	Right-handed alpha
Helix 70	AH7	F	429	437	Right-handed alpha
Helix 71	AH8	F	441	455	Right-handed alpha
Helix 72	AH9	F	458	464	Right-handed alpha

There are 28 sheets in PDB entry 6LT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	427	432	anti-parallel
Strand 3	A	419	423	anti-parallel
Strand 4	A	408	413	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	53	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	66	70	anti-parallel
Strand 4	A	76	80	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	92	first strand
Strand 2	A	106	110	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	127	129	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	147	148	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	167	168	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	182	first strand
Strand 2	A	187	191	anti-parallel
Strand 3	A	196	197	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	230	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	273	276	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	295	297	anti-parallel
Strand 3	A	306	308	anti-parallel
Strand 4	A	314	315	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	332	first strand
Strand 2	A	336	339	anti-parallel
Strand 3	A	347	350	anti-parallel
Strand 4	A	397	400	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	153	159	anti-parallel
Strand 3	B	130	137	anti-parallel
Strand 4	B	115	117	anti-parallel
Strand 5	C	81	87	anti-parallel
Strand 6	C	92	98	anti-parallel
Strand 7	C	111	117	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	785	first strand
Strand 2	B	733	736	parallel
Strand 3	B	810	811	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	817	819	first strand
Strand 2	B	933	935	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	44	47	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	234	237	parallel
Strand 3	C	306	309	parallel
Strand 4	C	314	316	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	427	432	anti-parallel
Strand 3	D	419	423	anti-parallel
Strand 4	D	408	413	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	53	first strand
Strand 2	D	56	61	anti-parallel
Strand 3	D	66	70	anti-parallel
Strand 4	D	76	80	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	92	first strand
Strand 2	D	106	110	anti-parallel
Strand 3	D	115	118	anti-parallel
Strand 4	D	127	129	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	147	148	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	167	168	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	182	first strand
Strand 2	D	187	191	anti-parallel
Strand 3	D	196	197	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	230	first strand
Strand 2	D	235	240	anti-parallel
Strand 3	D	245	249	anti-parallel
Strand 4	D	273	276	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	295	297	anti-parallel
Strand 3	D	306	308	anti-parallel
Strand 4	D	314	315	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	332	first strand
Strand 2	D	336	339	anti-parallel
Strand 3	D	347	350	anti-parallel
Strand 4	D	397	400	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	63	first strand
Strand 2	E	153	159	anti-parallel
Strand 3	E	130	137	anti-parallel
Strand 4	E	115	117	anti-parallel
Strand 5	F	81	87	anti-parallel
Strand 6	F	92	98	anti-parallel
Strand 7	F	111	117	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	782	785	first strand
Strand 2	E	733	736	parallel
Strand 3	E	810	811	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	817	819	first strand
Strand 2	E	933	935	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	44	47	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	280	281	first strand
Strand 2	F	234	237	parallel
Strand 3	F	306	309	parallel
Strand 4	F	314	316	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LT0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LT0