Analysis of interatomic Contacts of Structural Units in PDB entry:
6LT9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LT9 entry

There are 2 chains in PDB entry 6LT9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	HIS 650	ASN 842
B	SER 652	PHE 840

There are 4 helices in PDB entry 6LT9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	823	826	Right-handed 310
Helix 2	AA2	F	832	835	Right-handed 310
Helix 3	AA3	B	823	826	Right-handed 310
Helix 4	AA4	B	832	835	Right-handed 310

There are 8 sheets in PDB entry 6LT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	735	738	first strand
Strand 2	F	729	732	anti-parallel
Strand 3	F	722	725	anti-parallel
Strand 4	F	691	697	anti-parallel
Strand 5	F	788	795	anti-parallel
Strand 6	F	651	656	anti-parallel
Strand 7	B	828	830	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	773	774	first strand
Strand 2	F	765	770	anti-parallel
Strand 3	F	754	760	anti-parallel
Strand 4	F	671	677	anti-parallel
Strand 5	F	801	803	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	779	780	first strand
Strand 2	F	765	770	anti-parallel
Strand 3	F	754	760	anti-parallel
Strand 4	F	671	677	anti-parallel
Strand 5	F	820	821	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	701	703	first strand
Strand 2	F	709	711	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	828	830	first strand
Strand 2	B	653	656	anti-parallel
Strand 3	B	788	794	anti-parallel
Strand 4	B	691	697	anti-parallel
Strand 5	B	722	725	anti-parallel
Strand 6	B	729	732	anti-parallel
Strand 7	B	735	738	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	773	774	first strand
Strand 2	B	765	770	anti-parallel
Strand 3	B	754	760	anti-parallel
Strand 4	B	671	677	anti-parallel
Strand 5	B	801	803	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	B	765	770	anti-parallel
Strand 3	B	754	760	anti-parallel
Strand 4	B	671	677	anti-parallel
Strand 5	B	820	821	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	703	first strand
Strand 2	B	709	711	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LT9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LT9