Analysis of interatomic Contacts of Structural Units in PDB entry:
6LTH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LTH entry

There are 8 chains in PDB entry 6LTH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	SER 350	LEU 476
L	ILE 1639	SER 2285
M	SER 7	THR 357
N	HIS 423	GLN 952
O	HIS 423	GLN 952
P	LYS 125	GLU 505
Q	SER 172	LEU 276
R	GLY 13	LYS 82

There are 82 helices in PDB entry 6LTH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	362	387	Right-handed alpha
Helix 2	AA2	I	397	409	Right-handed alpha
Helix 3	AA3	I	409	428	Right-handed alpha
Helix 4	AA4	I	430	434	Right-handed 310
Helix 5	AA5	I	446	475	Right-handed alpha
Helix 6	AA6	L	1645	1649	Right-handed 310
Helix 7	AA7	L	1668	1679	Right-handed alpha
Helix 8	AA8	L	1680	1697	Right-handed alpha
Helix 9	AA9	L	1698	1701	Right-handed 310
Helix 10	AB1	L	1705	1709	Right-handed 310
Helix 11	AB2	L	1711	1729	Right-handed alpha
Helix 12	AB3	L	1740	1745	Right-handed alpha
Helix 13	AB4	L	1840	1846	Right-handed alpha
Helix 14	AB5	L	1971	1992	Right-handed alpha
Helix 15	AB6	L	1996	2002	Right-handed alpha
Helix 16	AB7	L	2004	2016	Right-handed alpha
Helix 17	AB8	L	2049	2068	Right-handed alpha
Helix 18	AB9	L	2069	2071	Right-handed 310
Helix 19	AC1	L	2077	2094	Right-handed alpha
Helix 20	AC2	L	2113	2127	Right-handed alpha
Helix 21	AC3	L	2128	2137	Right-handed alpha
Helix 22	AC4	L	2140	2158	Right-handed alpha
Helix 23	AC5	L	2160	2178	Right-handed alpha
Helix 24	AC6	L	2178	2187	Right-handed alpha
Helix 25	AC7	L	2190	2209	Right-handed alpha
Helix 26	AC8	L	2228	2243	Right-handed alpha
Helix 27	AC9	L	2247	2252	Right-handed alpha
Helix 28	AD1	L	2254	2264	Right-handed alpha
Helix 29	AD2	L	2268	2284	Right-handed alpha
Helix 30	AD3	M	29	36	Right-handed alpha
Helix 31	AD4	M	41	47	Right-handed alpha
Helix 32	AD5	M	56	66	Right-handed alpha
Helix 33	AD6	M	80	84	Right-handed 310
Helix 34	AD7	M	93	98	Right-handed alpha
Helix 35	AD8	M	173	181	Right-handed alpha
Helix 36	AD9	M	214	226	Right-handed alpha
Helix 37	AE1	M	229	248	Right-handed alpha
Helix 38	AE2	M	289	302	Right-handed alpha
Helix 39	AE3	M	305	324	Right-handed alpha
Helix 40	AE4	M	342	348	Right-handed alpha
Helix 41	AE5	N	427	431	Right-handed 310
Helix 42	AE6	N	440	446	Right-handed alpha
Helix 43	AE7	N	447	452	Right-handed alpha
Helix 44	AE8	N	458	475	Right-handed alpha
Helix 45	AE9	N	482	490	Right-handed alpha
Helix 46	AF1	N	493	507	Right-handed alpha
Helix 47	AF2	N	603	616	Right-handed alpha
Helix 48	AF3	N	620	628	Right-handed alpha
Helix 49	AF4	N	631	641	Right-handed alpha
Helix 50	AF5	N	672	682	Right-handed alpha
Helix 51	AF6	N	685	702	Right-handed alpha
Helix 52	AF7	N	859	949	Right-handed alpha
Helix 53	AF8	O	439	446	Right-handed alpha
Helix 54	AF9	O	447	450	Right-handed 310
Helix 55	AG1	O	458	475	Right-handed alpha
Helix 56	AG2	O	482	490	Right-handed alpha
Helix 57	AG3	O	493	507	Right-handed alpha
Helix 58	AG4	O	602	616	Right-handed alpha
Helix 59	AG5	O	619	628	Right-handed alpha
Helix 60	AG6	O	631	641	Right-handed alpha
Helix 61	AG7	O	645	650	Right-handed alpha
Helix 62	AG8	O	657	661	Right-handed 310
Helix 63	AG9	O	671	684	Right-handed alpha
Helix 64	AH1	O	685	705	Right-handed alpha
Helix 65	AH2	O	711	716	Right-handed alpha
Helix 66	AH3	O	868	952	Right-handed alpha
Helix 67	AH4	P	128	132	Right-handed 310
Helix 68	AH5	P	134	141	Right-handed alpha
Helix 69	AH6	P	143	173	Right-handed alpha
Helix 70	AH7	P	298	306	Right-handed alpha
Helix 71	AH8	P	312	327	Right-handed alpha
Helix 72	AH9	P	353	355	Right-handed 310
Helix 73	AI1	P	356	361	Right-handed alpha
Helix 74	AI2	P	400	411	Right-handed alpha
Helix 75	AI3	P	414	447	Right-handed alpha
Helix 76	AI4	P	447	468	Right-handed alpha
Helix 77	AI5	P	478	484	Right-handed 310
Helix 78	AI6	P	486	505	Right-handed alpha
Helix 79	AI7	Q	186	207	Right-handed alpha
Helix 80	AI8	Q	220	276	Right-handed alpha
Helix 81	AI9	R	14	38	Right-handed alpha
Helix 82	AJ1	R	58	62	Right-handed 310

There are 8 sheets in PDB entry 6LTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1814	1816	first strand
Strand 2	O	424	426	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	26	28	first strand
Strand 2	M	89	92	anti-parallel
Strand 3	M	52	54	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	186	195	first strand
Strand 2	M	198	207	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	261	270	first strand
Strand 2	M	273	282	anti-parallel
Strand 3	M	352	355	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	424	426	first strand
Strand 2	O	533	535	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	437	439	first strand
Strand 2	R	70	73	anti-parallel
Strand 3	R	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	523	524	first strand
Strand 2	R	49	52	anti-parallel
Strand 3	R	41	42	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	309	311	first strand
Strand 2	P	294	297	anti-parallel
Strand 3	P	365	366	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LTH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LTH