Analysis of interatomic Contacts of Structural Units in PDB entry:
6LTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LTO entry

There are 7 chains in PDB entry 6LTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 12ILE 354
B
 PHE 12ILE 354
C
 PHE 12ILE 354
D
 PHE 12ILE 354
E
 PHE 12ILE 354
F
 PHE 12ILE 354
G
 PHE 12ILE 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 98 helices in PDB entry 6LTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 60Right-handed alpha
Helix 2
AA2
A
73 87Right-handed alpha
Helix 3
AA3
A
96 98Right-handed 310
Helix 4
AA4
A
99 120Right-handed alpha
Helix 5
AA5
A
121 131Right-handed alpha
Helix 6
AA6
A
131 157Right-handed alpha
Helix 7
AA7
A
195 203Right-handed alpha
Helix 8
AA8
A
204 206Right-handed 310
Helix 9
AA9
A
209 238Right-handed alpha
Helix 10
AB1
A
269 294Right-handed alpha
Helix 11
AB2
A
306 312Right-handed 310
Helix 12
AB3
A
326 335Right-handed alpha
Helix 13
AB4
A
336 339Right-handed 310
Helix 14
AB5
A
342 350Right-handed alpha
Helix 15
AB6
B
32 60Right-handed alpha
Helix 16
AB7
B
73 87Right-handed alpha
Helix 17
AB8
B
96 98Right-handed 310
Helix 18
AB9
B
99 120Right-handed alpha
Helix 19
AC1
B
121 131Right-handed alpha
Helix 20
AC2
B
131 157Right-handed alpha
Helix 21
AC3
B
195 203Right-handed alpha
Helix 22
AC4
B
204 206Right-handed 310
Helix 23
AC5
B
209 238Right-handed alpha
Helix 24
AC6
B
269 294Right-handed alpha
Helix 25
AC7
B
306 312Right-handed 310
Helix 26
AC8
B
326 335Right-handed alpha
Helix 27
AC9
B
336 339Right-handed 310
Helix 28
AD1
B
342 350Right-handed alpha
Helix 29
AD2
C
32 60Right-handed alpha
Helix 30
AD3
C
73 87Right-handed alpha
Helix 31
AD4
C
96 98Right-handed 310
Helix 32
AD5
C
99 120Right-handed alpha
Helix 33
AD6
C
121 131Right-handed alpha
Helix 34
AD7
C
131 157Right-handed alpha
Helix 35
AD8
C
195 203Right-handed alpha
Helix 36
AD9
C
204 206Right-handed 310
Helix 37
AE1
C
209 238Right-handed alpha
Helix 38
AE2
C
269 294Right-handed alpha
Helix 39
AE3
C
306 312Right-handed 310
Helix 40
AE4
C
326 335Right-handed alpha
Helix 41
AE5
C
336 339Right-handed 310
Helix 42
AE6
C
342 350Right-handed alpha
Helix 43
AE7
D
32 60Right-handed alpha
Helix 44
AE8
D
73 87Right-handed alpha
Helix 45
AE9
D
96 98Right-handed 310
Helix 46
AF1
D
99 120Right-handed alpha
Helix 47
AF2
D
121 131Right-handed alpha
Helix 48
AF3
D
131 157Right-handed alpha
Helix 49
AF4
D
195 203Right-handed alpha
Helix 50
AF5
D
204 206Right-handed 310
Helix 51
AF6
D
209 238Right-handed alpha
Helix 52
AF7
D
269 294Right-handed alpha
Helix 53
AF8
D
306 312Right-handed 310
Helix 54
AF9
D
326 335Right-handed alpha
Helix 55
AG1
D
336 339Right-handed 310
Helix 56
AG2
D
342 350Right-handed alpha
Helix 57
AG3
E
32 60Right-handed alpha
Helix 58
AG4
E
73 87Right-handed alpha
Helix 59
AG5
E
96 98Right-handed 310
Helix 60
AG6
E
99 120Right-handed alpha
Helix 61
AG7
E
121 131Right-handed alpha
Helix 62
AG8
E
131 157Right-handed alpha
Helix 63
AG9
E
195 203Right-handed alpha
Helix 64
AH1
E
204 206Right-handed 310
Helix 65
AH2
E
209 238Right-handed alpha
Helix 66
AH3
E
269 294Right-handed alpha
Helix 67
AH4
E
306 312Right-handed 310
Helix 68
AH5
E
326 335Right-handed alpha
Helix 69
AH6
E
336 339Right-handed 310
Helix 70
AH7
E
342 350Right-handed alpha
Helix 71
AH8
F
32 60Right-handed alpha
Helix 72
AH9
F
73 87Right-handed alpha
Helix 73
AI1
F
96 98Right-handed 310
Helix 74
AI2
F
99 120Right-handed alpha
Helix 75
AI3
F
121 131Right-handed alpha
Helix 76
AI4
F
131 157Right-handed alpha
Helix 77
AI5
F
195 203Right-handed alpha
Helix 78
AI6
F
204 206Right-handed 310
Helix 79
AI7
F
209 238Right-handed alpha
Helix 80
AI8
F
269 294Right-handed alpha
Helix 81
AI9
F
306 312Right-handed 310
Helix 82
AJ1
F
326 335Right-handed alpha
Helix 83
AJ2
F
336 339Right-handed 310
Helix 84
AJ3
F
342 350Right-handed alpha
Helix 85
AJ4
G
32 60Right-handed alpha
Helix 86
AJ5
G
73 87Right-handed alpha
Helix 87
AJ6
G
96 98Right-handed 310
Helix 88
AJ7
G
99 120Right-handed alpha
Helix 89
AJ8
G
121 131Right-handed alpha
Helix 90
AJ9
G
131 157Right-handed alpha
Helix 91
AK1
G
195 203Right-handed alpha
Helix 92
AK2
G
204 206Right-handed 310
Helix 93
AK3
G
209 238Right-handed alpha
Helix 94
AK4
G
269 294Right-handed alpha
Helix 95
AK5
G
306 312Right-handed 310
Helix 96
AK6
G
326 335Right-handed alpha
Helix 97
AK7
G
336 339Right-handed 310
Helix 98
AK8
G
342 350Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6LTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
263 267anti-parallel
Strand 3
A
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
263 267anti-parallel
Strand 3
B
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
263 267anti-parallel
Strand 3
C
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 66first strand
Strand 2
D
263 267anti-parallel
Strand 3
D
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 66first strand
Strand 2
E
263 267anti-parallel
Strand 3
E
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
64 66first strand
Strand 2
F
263 267anti-parallel
Strand 3
F
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
64 66first strand
Strand 2
G
263 267anti-parallel
Strand 3
G
243 246anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il