Analysis of interatomic Contacts of Structural Units in PDB entry:
6LTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LTQ entry

There are 8 chains in PDB entry 6LTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ILE 155
A
 ASN 157ILE 221
B
 LYS 13ILE 155
B
 ASN 157ILE 221
C
 LYS 14ILE 155
C
 ASN 157ILE 221
D
 SER 7ILE 155
D
 ASN 157ILE 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6LTQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 42Right-handed alpha
Helix 2
AA2
A
60 73Right-handed alpha
Helix 3
AA3
A
130 141Right-handed alpha
Helix 4
AA4
A
154 171Right-handed alpha
Helix 5
AA5
A
184 190Right-handed alpha
Helix 6
AA6
A
192 198Right-handed 310
Helix 7
AA7
A
202 216Right-handed alpha
Helix 8
AA8
A
217 220Right-handed 310
Helix 9
AA9
B
31 41Right-handed alpha
Helix 10
AB1
B
58 73Right-handed alpha
Helix 11
AB2
B
130 141Right-handed alpha
Helix 12
AB3
B
154 171Right-handed alpha
Helix 13
AB4
B
184 190Right-handed alpha
Helix 14
AB5
B
192 198Right-handed 310
Helix 15
AB6
B
202 216Right-handed alpha
Helix 16
AB7
B
217 221Right-handed 310
Helix 17
AB8
C
31 41Right-handed alpha
Helix 18
AB9
C
60 73Right-handed alpha
Helix 19
AC1
C
130 141Right-handed alpha
Helix 20
AC2
C
154 171Right-handed alpha
Helix 21
AC3
C
184 190Right-handed alpha
Helix 22
AC4
C
192 198Right-handed 310
Helix 23
AC5
C
202 216Right-handed alpha
Helix 24
AC6
C
217 221Right-handed 310
Helix 25
AC7
D
31 41Right-handed alpha
Helix 26
AC8
D
58 73Right-handed alpha
Helix 27
AC9
D
130 141Right-handed alpha
Helix 28
AD1
D
154 171Right-handed alpha
Helix 29
AD2
D
184 190Right-handed alpha
Helix 30
AD3
D
192 198Right-handed 310
Helix 31
AD4
D
202 216Right-handed alpha
Helix 32
AD5
D
217 221Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6LTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 55first strand
Strand 2
A
15 22parallel
Strand 3
A
77 83parallel
Strand 4
A
175 181parallel
Strand 5
A
90 93anti-parallel
Strand 6
A
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
112 115anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 55first strand
Strand 2
B
15 22parallel
Strand 3
B
77 83parallel
Strand 4
B
175 181parallel
Strand 5
B
90 93anti-parallel
Strand 6
B
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 55first strand
Strand 2
C
15 22parallel
Strand 3
C
77 83parallel
Strand 4
C
175 181parallel
Strand 5
C
90 93anti-parallel
Strand 6
C
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 97first strand
Strand 2
C
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 55first strand
Strand 2
D
15 22parallel
Strand 3
D
77 83parallel
Strand 4
D
175 181parallel
Strand 5
D
90 93anti-parallel
Strand 6
D
145 148parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 97first strand
Strand 2
D
124 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il