Analysis of interatomic Contacts of Structural Units in PDB entry:
6LTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LTR entry

There are 5 chains in PDB entry 6LTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLN 1036
B
 A 1 U 49
D
 G 1 T 11
C
 A 1 C 35
E
 A 22 A 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6LTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 46Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
80 82Right-handed 310
Helix 5
AA5
A
87 89Right-handed 310
Helix 6
AA6
A
90 100Right-handed alpha
Helix 7
AA7
A
104 113Right-handed alpha
Helix 8
AA8
A
124 136Right-handed alpha
Helix 9
AA9
A
138 152Right-handed alpha
Helix 10
AB1
A
165 173Right-handed alpha
Helix 11
AB2
A
179 195Right-handed alpha
Helix 12
AB3
A
204 215Right-handed alpha
Helix 13
AB4
A
221 228Right-handed alpha
Helix 14
AB5
A
234 242Right-handed alpha
Helix 15
AB6
A
249 264Right-handed alpha
Helix 16
AB7
A
272 284Right-handed alpha
Helix 17
AB8
A
288 327Right-handed alpha
Helix 18
AB9
A
331 339Right-handed alpha
Helix 19
AC1
A
340 342Right-handed 310
Helix 20
AC2
A
354 361Right-handed 310
Helix 21
AC3
A
362 373Right-handed alpha
Helix 22
AC4
A
378 388Right-handed alpha
Helix 23
AC5
A
397 406Right-handed alpha
Helix 24
AC6
A
412 432Right-handed alpha
Helix 25
AC7
A
452 456Right-handed 310
Helix 26
AC8
A
491 498Right-handed alpha
Helix 27
AC9
A
513 517Right-handed 310
Helix 28
AD1
A
532 534Right-handed 310
Helix 29
AD2
A
535 551Right-handed alpha
Helix 30
AD3
A
655 658Right-handed 310
Helix 31
AD4
A
659 672Right-handed alpha
Helix 32
AD5
A
689 699Right-handed alpha
Helix 33
AD6
A
702 719Right-handed alpha
Helix 34
AD7
A
722 739Right-handed alpha
Helix 35
AD8
A
750 772Right-handed alpha
Helix 36
AD9
A
781 789Right-handed alpha
Helix 37
AE1
A
789 825Right-handed alpha
Helix 38
AE2
A
844 855Right-handed alpha
Helix 39
AE3
A
855 867Right-handed alpha
Helix 40
AE4
A
868 871Right-handed 310
Helix 41
AE5
A
907 909Right-handed 310
Helix 42
AE6
A
910 922Right-handed alpha
Helix 43
AE7
A
928 943Right-handed alpha
Helix 44
AE8
A
945 947Right-handed 310
Helix 45
AE9
A
948 955Right-handed alpha
Helix 46
AF1
A
964 977Right-handed alpha
Helix 47
AF2
A
1018 1028Right-handed alpha
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There are 9 sheets in PDB entry 6LTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 11first strand
Strand 2
A
573 584anti-parallel
Strand 3
A
566 568anti-parallel
Strand 4
A
444 446anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
119 123anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 476first strand
Strand 2
A
482 490anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
556 557parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 620first strand
Strand 2
A
625 634anti-parallel
Strand 3
A
607 614anti-parallel
Strand 4
A
594 599anti-parallel
Strand 5
A
827 833parallel
Strand 6
A
873 877parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 641first strand
Strand 2
A
644 647anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
675 678first strand
Strand 2
A
684 687anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
901 905first strand
Strand 2
A
982 986anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 995first strand
Strand 2
A
1011 1017anti-parallel
Strand 3
A
1004 1008anti-parallel
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