Analysis of interatomic Contacts of Structural Units in PDB entry:
6LU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LU0 entry

There are 4 chains in PDB entry 6LU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LYS 1031
B
 A 1 A 33
D
 G 1 T 10
C
 G 5 C 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6LU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 46Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
104 113Right-handed alpha
Helix 6
AA6
A
124 136Right-handed alpha
Helix 7
AA7
A
138 152Right-handed alpha
Helix 8
AA8
A
166 173Right-handed alpha
Helix 9
AA9
A
179 196Right-handed alpha
Helix 10
AB1
A
204 216Right-handed alpha
Helix 11
AB2
A
221 227Right-handed alpha
Helix 12
AB3
A
234 242Right-handed alpha
Helix 13
AB4
A
249 264Right-handed alpha
Helix 14
AB5
A
272 284Right-handed alpha
Helix 15
AB6
A
288 325Right-handed alpha
Helix 16
AB7
A
331 338Right-handed alpha
Helix 17
AB8
A
412 432Right-handed alpha
Helix 18
AB9
A
452 456Right-handed 310
Helix 19
AC1
A
491 498Right-handed alpha
Helix 20
AC2
A
513 517Right-handed 310
Helix 21
AC3
A
532 534Right-handed 310
Helix 22
AC4
A
535 551Right-handed alpha
Helix 23
AC5
A
655 658Right-handed 310
Helix 24
AC6
A
659 672Right-handed alpha
Helix 25
AC7
A
690 699Right-handed alpha
Helix 26
AC8
A
702 719Right-handed alpha
Helix 27
AC9
A
722 739Right-handed alpha
Helix 28
AD1
A
750 772Right-handed alpha
Helix 29
AD2
A
781 789Right-handed alpha
Helix 30
AD3
A
789 824Right-handed alpha
Helix 31
AD4
A
853 867Right-handed alpha
Helix 32
AD5
A
868 871Right-handed 310
Helix 33
AD6
A
910 923Right-handed alpha
Helix 34
AD7
A
929 944Right-handed alpha
Helix 35
AD8
A
945 953Right-handed alpha
Helix 36
AD9
A
966 975Right-handed alpha
Helix 37
AE1
A
1018 1028Right-handed alpha
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There are 8 sheets in PDB entry 6LU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 11first strand
Strand 2
A
573 584anti-parallel
Strand 3
A
566 568anti-parallel
Strand 4
A
444 446anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
119 123anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 476first strand
Strand 2
A
482 489anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
556 557parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 620first strand
Strand 2
A
625 634anti-parallel
Strand 3
A
606 614anti-parallel
Strand 4
A
594 600anti-parallel
Strand 5
A
827 832parallel
Strand 6
A
873 876parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 641first strand
Strand 2
A
644 647anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
902 905first strand
Strand 2
A
982 985anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 995first strand
Strand 2
A
1011 1017anti-parallel
Strand 3
A
1004 1008anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il