Analysis of interatomic Contacts of Structural Units in PDB entry:
6LUF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LUF entry

There are 6 chains in PDB entry 6LUF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 130	GLY 376
B	HIS 130	GLY 376
C	MET 131	GLY 376
D	MET 131	GLY 376
E	MET 131	GLY 376
F	HIS 130	ILE 184

There are 86 helices in PDB entry 6LUF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	150	Right-handed alpha
Helix 2	AA2	A	166	175	Right-handed alpha
Helix 3	AA3	A	195	201	Right-handed alpha
Helix 4	AA4	A	217	222	Right-handed alpha
Helix 5	AA5	A	231	235	Right-handed 310
Helix 6	AA6	A	236	250	Right-handed alpha
Helix 7	AA7	A	274	281	Right-handed alpha
Helix 8	AA8	A	285	293	Right-handed alpha
Helix 9	AA9	A	301	307	Right-handed 310
Helix 10	AB1	A	308	324	Right-handed alpha
Helix 11	AB2	A	332	341	Right-handed alpha
Helix 12	AB3	A	347	362	Right-handed alpha
Helix 13	AB4	B	135	150	Right-handed alpha
Helix 14	AB5	B	164	175	Right-handed alpha
Helix 15	AB6	B	191	194	Right-handed 310
Helix 16	AB7	B	195	201	Right-handed alpha
Helix 17	AB8	B	217	222	Right-handed alpha
Helix 18	AB9	B	231	235	Right-handed 310
Helix 19	AC1	B	236	250	Right-handed alpha
Helix 20	AC2	B	274	281	Right-handed alpha
Helix 21	AC3	B	285	293	Right-handed alpha
Helix 22	AC4	B	301	307	Right-handed 310
Helix 23	AC5	B	308	323	Right-handed alpha
Helix 24	AC6	B	332	341	Right-handed alpha
Helix 25	AC7	B	347	362	Right-handed alpha
Helix 26	AC8	C	135	150	Right-handed alpha
Helix 27	AC9	C	165	175	Right-handed alpha
Helix 28	AD1	C	195	201	Right-handed alpha
Helix 29	AD2	C	217	222	Right-handed alpha
Helix 30	AD3	C	231	235	Right-handed 310
Helix 31	AD4	C	236	250	Right-handed alpha
Helix 32	AD5	C	274	281	Right-handed alpha
Helix 33	AD6	C	285	293	Right-handed alpha
Helix 34	AD7	C	301	307	Right-handed 310
Helix 35	AD8	C	308	323	Right-handed alpha
Helix 36	AD9	C	332	341	Right-handed alpha
Helix 37	AE1	C	347	362	Right-handed alpha
Helix 38	AE2	D	135	150	Right-handed alpha
Helix 39	AE3	D	165	175	Right-handed alpha
Helix 40	AE4	D	195	201	Right-handed alpha
Helix 41	AE5	D	217	222	Right-handed alpha
Helix 42	AE6	D	231	235	Right-handed 310
Helix 43	AE7	D	236	250	Right-handed alpha
Helix 44	AE8	D	274	281	Right-handed alpha
Helix 45	AE9	D	285	293	Right-handed alpha
Helix 46	AF1	D	301	307	Right-handed 310
Helix 47	AF2	D	308	323	Right-handed alpha
Helix 48	AF3	D	332	341	Right-handed alpha
Helix 49	AF4	D	347	362	Right-handed alpha
Helix 50	AF5	E	135	150	Right-handed alpha
Helix 51	AF6	E	164	175	Right-handed alpha
Helix 52	AF7	E	195	201	Right-handed alpha
Helix 53	AF8	E	217	222	Right-handed alpha
Helix 54	AF9	E	231	235	Right-handed 310
Helix 55	AG1	E	236	250	Right-handed alpha
Helix 56	AG2	E	274	281	Right-handed alpha
Helix 57	AG3	E	285	293	Right-handed alpha
Helix 58	AG4	E	301	307	Right-handed 310
Helix 59	AG5	E	308	323	Right-handed alpha
Helix 60	AG6	E	332	341	Right-handed alpha
Helix 61	AG7	E	346	362	Right-handed alpha
Helix 62	AG8	F	135	150	Right-handed alpha
Helix 63	AG9	F	164	175	Right-handed alpha
Helix 64	AH1	F	191	194	Right-handed 310
Helix 65	AH2	F	195	201	Right-handed alpha
Helix 66	AH3	F	217	222	Right-handed alpha
Helix 67	AH4	F	231	235	Right-handed 310
Helix 68	AH5	F	236	250	Right-handed alpha
Helix 69	AH6	F	274	281	Right-handed alpha
Helix 70	AH7	F	285	293	Right-handed alpha
Helix 71	AH8	F	301	307	Right-handed 310
Helix 72	AH9	F	308	322	Right-handed alpha
Helix 73	AI1	F	332	341	Right-handed alpha
Helix 74	AI2	F	347	362	Right-handed alpha
Helix 75	AI3	G	135	150	Right-handed alpha
Helix 76	AI4	G	164	175	Right-handed alpha
Helix 77	AI5	G	195	201	Right-handed alpha
Helix 78	AI6	G	217	222	Right-handed alpha
Helix 79	AI7	G	231	235	Right-handed 310
Helix 80	AI8	G	236	250	Right-handed alpha
Helix 81	AI9	G	274	281	Right-handed alpha
Helix 82	AJ1	G	285	293	Right-handed alpha
Helix 83	AJ2	G	301	307	Right-handed 310
Helix 84	AJ3	G	308	323	Right-handed alpha
Helix 85	AJ4	G	332	341	Right-handed alpha
Helix 86	AJ5	G	347	362	Right-handed alpha

There are 21 sheets in PDB entry 6LUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	187	first strand
Strand 2	A	226	230	parallel
Strand 3	A	266	270	parallel
Strand 4	A	155	158	parallel
Strand 5	A	295	298	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	215	216	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	261	262	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	187	first strand
Strand 2	B	226	230	parallel
Strand 3	B	266	270	parallel
Strand 4	B	155	158	parallel
Strand 5	B	295	298	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	215	216	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	260	262	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	187	first strand
Strand 2	C	226	230	parallel
Strand 3	C	266	270	parallel
Strand 4	C	155	158	parallel
Strand 5	C	295	298	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	215	216	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	253	first strand
Strand 2	C	260	262	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	187	first strand
Strand 2	D	226	230	parallel
Strand 3	D	266	270	parallel
Strand 4	D	155	158	parallel
Strand 5	D	295	298	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	215	216	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	260	262	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	187	first strand
Strand 2	E	226	230	parallel
Strand 3	E	266	270	parallel
Strand 4	E	155	158	parallel
Strand 5	E	295	298	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	203	first strand
Strand 2	E	215	216	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	251	253	first strand
Strand 2	E	260	262	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	187	first strand
Strand 2	F	226	230	parallel
Strand 3	F	266	270	parallel
Strand 4	F	155	158	parallel
Strand 5	F	295	298	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	203	first strand
Strand 2	F	215	216	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	251	253	first strand
Strand 2	F	260	262	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	187	first strand
Strand 2	G	226	230	parallel
Strand 3	G	266	270	parallel
Strand 4	G	155	158	parallel
Strand 5	G	295	298	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	203	first strand
Strand 2	G	215	216	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	251	252	first strand
Strand 2	G	261	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LUF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LUF