Analysis of interatomic Contacts of Structural Units in PDB entry:
6LUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LUM entry

There are 15 chains in PDB entry 6LUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 15	ARG 136
D	LEU 11	SER 156
E	MET 1	GLU 31
A	ILE 2	GLU 581
B	ALA 23	ALA 260
G	THR 15	PHE 137
H	PRO 37	SER 156
I	MET 1	GLU 31
J	ILE 2	GLU 581
K	PRO 14	ALA 260
M	ARG 16	LEU 138
N	PRO 41	SER 156
O	MET 1	GLU 31
P	ILE 2	GLU 581
Q	ALA 23	ALA 260

There are112 helices in PDB entry 6LUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	24	53	Right-handed alpha
Helix 2	AA2	C	54	56	Right-handed 310
Helix 3	AA3	C	57	68	Right-handed alpha
Helix 4	AA4	C	70	100	Right-handed alpha
Helix 5	AA5	C	102	107	Right-handed alpha
Helix 6	AA6	C	109	135	Right-handed alpha
Helix 7	AA7	D	25	30	Right-handed 310
Helix 8	AA8	D	42	71	Right-handed alpha
Helix 9	AA9	D	74	79	Right-handed 310
Helix 10	AB1	D	80	88	Right-handed alpha
Helix 11	AB2	D	90	120	Right-handed alpha
Helix 12	AB3	D	122	150	Right-handed alpha
Helix 13	AB4	E	2	29	Right-handed alpha
Helix 14	AB5	A	15	29	Right-handed alpha
Helix 15	AB6	A	38	47	Right-handed 310
Helix 16	AB7	A	62	74	Right-handed alpha
Helix 17	AB8	A	79	100	Right-handed alpha
Helix 18	AB9	A	138	154	Right-handed alpha
Helix 19	AC1	A	222	230	Right-handed alpha
Helix 20	AC2	A	256	261	Right-handed alpha
Helix 21	AC3	A	273	278	Right-handed alpha
Helix 22	AC4	A	286	300	Right-handed alpha
Helix 23	AC5	A	398	422	Right-handed alpha
Helix 24	AC6	A	432	444	Right-handed alpha
Helix 25	AC7	A	450	466	Right-handed alpha
Helix 26	AC8	A	471	489	Right-handed alpha
Helix 27	AC9	A	502	528	Right-handed alpha
Helix 28	AD1	B	55	66	Right-handed alpha
Helix 29	AD2	B	95	99	Right-handed 310
Helix 30	AD3	B	104	108	Right-handed 310
Helix 31	AD4	B	133	141	Right-handed alpha
Helix 32	AD5	B	164	169	Right-handed alpha
Helix 33	AD6	B	180	183	Right-handed 310
Helix 34	AD7	B	184	189	Right-handed alpha
Helix 35	AD8	B	195	207	Right-handed alpha
Helix 36	AD9	B	213	221	Right-handed alpha
Helix 37	AE1	B	226	230	Right-handed 310
Helix 38	AE2	B	234	240	Right-handed alpha
Helix 39	AE3	B	245	259	Right-handed alpha
Helix 40	AE4	G	24	53	Right-handed alpha
Helix 41	AE5	G	54	56	Right-handed 310
Helix 42	AE6	G	57	68	Right-handed alpha
Helix 43	AE7	G	70	100	Right-handed alpha
Helix 44	AE8	G	103	105	Right-handed 310
Helix 45	AE9	G	106	137	Right-handed alpha
Helix 46	AF1	H	42	71	Right-handed alpha
Helix 47	AF2	H	74	79	Right-handed 310
Helix 48	AF3	H	80	88	Right-handed alpha
Helix 49	AF4	H	90	120	Right-handed alpha
Helix 50	AF5	H	122	151	Right-handed alpha
Helix 51	AF6	I	2	29	Right-handed alpha
Helix 52	AF7	J	15	25	Right-handed alpha
Helix 53	AF8	J	42	47	Right-handed 310
Helix 54	AF9	J	62	74	Right-handed alpha
Helix 55	AG1	J	79	100	Right-handed alpha
Helix 56	AG2	J	138	154	Right-handed alpha
Helix 57	AG3	J	222	230	Right-handed alpha
Helix 58	AG4	J	273	278	Right-handed alpha
Helix 59	AG5	J	286	299	Right-handed alpha
Helix 60	AG6	J	398	422	Right-handed alpha
Helix 61	AG7	J	432	444	Right-handed alpha
Helix 62	AG8	J	450	465	Right-handed alpha
Helix 63	AG9	J	471	489	Right-handed alpha
Helix 64	AH1	J	503	528	Right-handed alpha
Helix 65	AH2	K	55	66	Right-handed alpha
Helix 66	AH3	K	95	99	Right-handed 310
Helix 67	AH4	K	133	141	Right-handed alpha
Helix 68	AH5	K	161	166	Right-handed alpha
Helix 69	AH6	K	180	183	Right-handed 310
Helix 70	AH7	K	184	189	Right-handed alpha
Helix 71	AH8	K	195	207	Right-handed alpha
Helix 72	AH9	K	213	222	Right-handed alpha
Helix 73	AI1	K	226	230	Right-handed 310
Helix 74	AI2	K	234	240	Right-handed alpha
Helix 75	AI3	K	245	259	Right-handed alpha
Helix 76	AI4	M	24	53	Right-handed alpha
Helix 77	AI5	M	57	68	Right-handed alpha
Helix 78	AI6	M	70	100	Right-handed alpha
Helix 79	AI7	M	102	107	Right-handed alpha
Helix 80	AI8	M	109	137	Right-handed alpha
Helix 81	AI9	N	42	71	Right-handed alpha
Helix 82	AJ1	N	74	79	Right-handed 310
Helix 83	AJ2	N	80	88	Right-handed alpha
Helix 84	AJ3	N	90	120	Right-handed alpha
Helix 85	AJ4	N	122	151	Right-handed alpha
Helix 86	AJ5	O	2	29	Right-handed alpha
Helix 87	AJ6	P	15	26	Right-handed alpha
Helix 88	AJ7	P	38	47	Right-handed 310
Helix 89	AJ8	P	62	74	Right-handed alpha
Helix 90	AJ9	P	79	98	Right-handed alpha
Helix 91	AK1	P	138	154	Right-handed alpha
Helix 92	AK2	P	222	229	Right-handed alpha
Helix 93	AK3	P	273	278	Right-handed alpha
Helix 94	AK4	P	286	301	Right-handed alpha
Helix 95	AK5	P	399	422	Right-handed alpha
Helix 96	AK6	P	432	444	Right-handed alpha
Helix 97	AK7	P	450	466	Right-handed alpha
Helix 98	AK8	P	471	489	Right-handed alpha
Helix 99	AK9	P	503	528	Right-handed alpha
Helix 100	AL1	P	544	549	Right-handed alpha
Helix 101	AL2	Q	55	66	Right-handed alpha
Helix 102	AL3	Q	95	99	Right-handed 310
Helix 103	AL4	Q	104	108	Right-handed 310
Helix 104	AL5	Q	133	141	Right-handed alpha
Helix 105	AL6	Q	161	166	Right-handed alpha
Helix 106	AL7	Q	180	183	Right-handed 310
Helix 107	AL8	Q	184	189	Right-handed alpha
Helix 108	AL9	Q	195	207	Right-handed alpha
Helix 109	AM1	Q	213	222	Right-handed alpha
Helix 110	AM2	Q	226	230	Right-handed 310
Helix 111	AM3	Q	234	240	Right-handed alpha
Helix 112	AM4	Q	245	259	Right-handed alpha

There are 25 sheets in PDB entry 6LUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	191	195	parallel
Strand 3	A	175	185	anti-parallel
Strand 4	A	162	172	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	31	35	parallel
Strand 3	A	9	12	parallel
Strand 4	A	198	201	parallel
Strand 5	A	375	381	parallel
Strand 6	A	367	369	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	132	133	anti-parallel
Strand 3	A	114	115	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	550	556	anti-parallel
Strand 3	A	565	571	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	352	356	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	386	387	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	48	first strand
Strand 2	B	26	31	anti-parallel
Strand 3	B	114	118	parallel
Strand 4	B	88	89	anti-parallel
Strand 5	B	92	93	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	130	131	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	191	195	parallel
Strand 3	J	175	185	anti-parallel
Strand 4	J	162	172	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	159	first strand
Strand 2	J	32	34	parallel
Strand 3	J	10	12	parallel
Strand 4	J	199	201	parallel
Strand 5	J	380	381	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	52	first strand
Strand 2	J	132	133	anti-parallel
Strand 3	J	114	115	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	234	235	first strand
Strand 2	J	550	556	anti-parallel
Strand 3	J	565	571	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	240	243	first strand
Strand 2	J	352	356	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	266	267	first strand
Strand 2	J	271	272	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	360	361	first strand
Strand 2	J	386	387	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	47	first strand
Strand 2	K	27	32	anti-parallel
Strand 3	K	114	118	parallel
Strand 4	K	88	89	anti-parallel
Strand 5	K	92	93	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	125	127	first strand
Strand 2	K	130	131	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	191	195	parallel
Strand 3	P	175	185	anti-parallel
Strand 4	P	162	172	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	158	159	first strand
Strand 2	P	32	34	parallel
Strand 3	P	10	12	parallel
Strand 4	P	199	201	parallel
Strand 5	P	380	381	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	51	52	first strand
Strand 2	P	132	133	anti-parallel
Strand 3	P	114	115	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	233	235	first strand
Strand 2	P	550	556	anti-parallel
Strand 3	P	565	571	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	240	243	first strand
Strand 2	P	352	356	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	360	361	first strand
Strand 2	P	386	387	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	42	48	first strand
Strand 2	Q	26	32	anti-parallel
Strand 3	Q	114	118	parallel
Strand 4	Q	88	89	anti-parallel
Strand 5	Q	92	93	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	125	127	first strand
Strand 2	Q	130	131	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LUM